View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3676_low_16 (Length: 286)
Name: NF3676_low_16
Description: NF3676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3676_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 9 - 271
Target Start/End: Complemental strand, 235685 - 235422
Alignment:
| Q |
9 |
gacatcatcacacccgaagacagagaaacaataagaccaccatcctcactcgatggccatgtcgtcagccacttcaatcctaaaaaagtggtcgctgtca |
108 |
Q |
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| T |
235685 |
gacatcatcacacccgaagacagagaaacaataagaccaccgtcctcacccgatggccatgtcgtcagccacttcaatcctaaaatagtggtcgctgtca |
235586 |
T |
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| Q |
109 |
tgtcccatggaaaaaa-ccctatcattgtcggctcattgaactgtactggagaagaaccagtagtgttgaaatgtggcgatgagaattggaaacttattc |
207 |
Q |
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| T |
235585 |
tgtcccatggaaaaaaaccctatcattgtcggctcgttgaactgtactggagaagaaccagtagtgttgaaatgtggcgatgagaattggaaacttattc |
235486 |
T |
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| Q |
208 |
ctggaatgtcggcctatttaggagacattcgtgttttcaaaggccagccttatgtggttgataa |
271 |
Q |
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| T |
235485 |
ctggaatgtcggcctatttaggagacatccgtgttttcaaaggccagccttatgtggttgataa |
235422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 265
Target Start/End: Original strand, 8814023 - 8814176
Alignment:
| Q |
115 |
atggaaaaaaccctatcattgtcggctcattgaactgtactggagaagaacca---gtagtgttgaaatgtggcgatgagaattggaaacttattcctgg |
211 |
Q |
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| T |
8814023 |
atggaaataaacctatcatcgtcgcctcatttaactgtaaaggagaagaacaactggtagtgttcaaatgcggcgatgagaattggaagtttattcctga |
8814122 |
T |
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| Q |
212 |
aatgtcggcctatttaggagacattcgtgttttcaaaggccagccttatgtggt |
265 |
Q |
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| T |
8814123 |
aatgtcagtctactttggagatatccgtgctttcaaaggtcagtgttatgtggt |
8814176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 165 - 261
Target Start/End: Original strand, 251114 - 251210
Alignment:
| Q |
165 |
ccagtagtgttgaaatgtggcgatgagaattggaaacttattcctggaatgtcggcctatttaggagacattcgtgttttcaaaggccagccttatg |
261 |
Q |
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| T |
251114 |
ccagtagtgttcaaatgcggtgatgagaattggaaggctatacctaacatgtcggcttattttggagacatttgtgttttcaaaggccgaccttatg |
251210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 261
Target Start/End: Complemental strand, 247267 - 247164
Alignment:
| Q |
158 |
agaagaaccagtagtgttgaaatgtggcgatgagaattggaaacttattcctggaatgtcggcctatttaggagacattcgtgttttcaaaggccagcct |
257 |
Q |
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| T |
247267 |
agaacaaccagcattgttgaaatgcggtgatgagaattggaaggctatacctcacatgtcggtttatttaggagacatttgtgttttcaaaggccgacct |
247168 |
T |
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| Q |
258 |
tatg |
261 |
Q |
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|||| |
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|
| T |
247167 |
tatg |
247164 |
T |
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