View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3676_low_17 (Length: 284)
Name: NF3676_low_17
Description: NF3676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3676_low_17 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 40 - 284
Target Start/End: Complemental strand, 8347618 - 8347375
Alignment:
| Q |
40 |
ttgtattgaggaataggcttcgctatgtcctcgggaagaaaattttgatgtataagaataatcctattagagaataagtgctatatttatagacaaaatt |
139 |
Q |
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| T |
8347618 |
ttgtattgaggaataggcttcgctatgtcctcgggaagaaaattttgatatataagaataaacctattagagaataagtgctatattcatagacaaaatt |
8347519 |
T |
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| Q |
140 |
tatcacgaaaccttcccggaaatgaaagcagcagattataaacaaggatttagcataaatcaaggaaagttggaaagtaaatggaggtaaaaaataaaag |
239 |
Q |
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| T |
8347518 |
tatcacgaaaccttcccgaaaatgaaagcagcagattataaacaaggatttagcataaatcaaggaaagttggaaagtaaatggaggtaaaaaataaaag |
8347419 |
T |
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| Q |
240 |
gataattctatatacaaagaatttttcttcgcgaggacataacga |
284 |
Q |
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| T |
8347418 |
gataattctatatacaaagaa-ttttcttcgcgaggacataacga |
8347375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 115 - 238
Target Start/End: Original strand, 8347232 - 8347355
Alignment:
| Q |
115 |
aagtgctatatttatagacaaaatttatcacgaaaccttcccggaaatgaaagcagcagattataaacaaggatttagcataaatcaaggaaagttggaa |
214 |
Q |
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| T |
8347232 |
aagtgctatattgaacgacaaaatttatcacgaaaccttcccaaaaatgaaagcagcgaattataaacaaggatttagcataaatcaagggaagttggga |
8347331 |
T |
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| Q |
215 |
agtaaatggaggtaaaaaataaaa |
238 |
Q |
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| T |
8347332 |
aataaatggagttaaaaaaaaaaa |
8347355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 115 - 238
Target Start/End: Complemental strand, 8347747 - 8347620
Alignment:
| Q |
115 |
aagtgctatatttatagacaaaatttatcacgaaaccttcccggaaatgaaagcagc----agattataaacaaggatttagcataaatcaaggaaagtt |
210 |
Q |
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| T |
8347747 |
aagtgctatattcagcgacaaaatttatcacgaaacctttccaaaaatgaaagcagcgaattaattataaacaaggatttagcagaaatcaagggaagat |
8347648 |
T |
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| Q |
211 |
ggaaagtaaatggaggtaaaaaataaaa |
238 |
Q |
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| T |
8347647 |
gggaagtaaatggaggtaaaaaataaaa |
8347620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 233
Target Start/End: Original strand, 30954329 - 30954450
Alignment:
| Q |
113 |
ataagtgctatatttatagacaaaatttatcacgaaaccttcccggaaatgaaagcagcagattat-aaacaaggatttagcataaatcaaggaaagttg |
211 |
Q |
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|||||||||||||| | || |||| |||||||| || ||||||| ||||||||||| || ||||| ||| ||||||| ||| ||||||||| |||||| |
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| T |
30954329 |
ataagtgctatattcagcgaaaaaagttatcacggaaacttcccgaaaatgaaagcaacaaattataaaaggaggatttggcagaaatcaagggaagttg |
30954428 |
T |
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| Q |
212 |
gaaagtaaatggaggtaaaaaa |
233 |
Q |
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| T |
30954429 |
aaaaattaatggaagtaaaaaa |
30954450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 30954465 - 30954499
Alignment:
| Q |
47 |
gaggaataggcttcgctatgtcctcgggaagaaaa |
81 |
Q |
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| T |
30954465 |
gaggaataggcttcgctatgtcctcgtgaagaaaa |
30954499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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