View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3676_low_22 (Length: 270)

Name: NF3676_low_22
Description: NF3676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3676_low_22
NF3676_low_22
[»] chr3 (5 HSPs)
chr3 (36-213)||(11569555-11569732)
chr3 (134-213)||(51241095-51241173)
chr3 (140-213)||(37802275-37802347)
chr3 (36-211)||(28710370-28710549)
chr3 (135-212)||(26595823-26595899)
[»] chr7 (7 HSPs)
chr7 (36-213)||(37648353-37648528)
chr7 (150-213)||(8454569-8454631)
chr7 (141-213)||(8072056-8072127)
chr7 (135-213)||(319209-319286)
chr7 (138-210)||(24500408-24500479)
chr7 (174-213)||(25415663-25415702)
chr7 (36-100)||(24500506-24500570)
[»] chr6 (8 HSPs)
chr6 (36-211)||(2367542-2367710)
chr6 (134-213)||(29608910-29608988)
chr6 (133-213)||(9874998-9875077)
chr6 (150-212)||(33021163-33021224)
chr6 (173-213)||(4220565-4220605)
chr6 (35-104)||(6857678-6857746)
chr6 (150-213)||(6857587-6857649)
chr6 (140-207)||(18343443-18343509)
[»] chr5 (9 HSPs)
chr5 (66-213)||(15437870-15438010)
chr5 (39-208)||(18275327-18275494)
chr5 (114-209)||(32240351-32240445)
chr5 (78-213)||(21581732-21581858)
chr5 (157-213)||(27856403-27856458)
chr5 (133-213)||(4733558-4733636)
chr5 (152-213)||(11735358-11735418)
chr5 (151-202)||(35824315-35824365)
chr5 (173-213)||(32858989-32859029)
[»] chr4 (7 HSPs)
chr4 (77-213)||(17806178-17806305)
chr4 (143-213)||(10533105-10533174)
chr4 (36-213)||(21526012-21526193)
chr4 (35-213)||(9320196-9320365)
chr4 (150-213)||(26607749-26607811)
chr4 (36-213)||(43366657-43366839)
chr4 (172-210)||(54480305-54480343)
[»] chr8 (7 HSPs)
chr8 (113-213)||(10608691-10608789)
chr8 (154-213)||(8386856-8386914)
chr8 (135-213)||(40112263-40112340)
chr8 (150-202)||(284207-284258)
chr8 (150-202)||(631619-631670)
chr8 (150-202)||(817431-817482)
chr8 (172-213)||(18431971-18432012)
[»] chr1 (11 HSPs)
chr1 (134-213)||(1748496-1748574)
chr1 (150-213)||(29172666-29172728)
chr1 (150-213)||(933178-933240)
chr1 (172-212)||(15964968-15965008)
chr1 (150-212)||(6342147-6342208)
chr1 (172-213)||(47335816-47335857)
chr1 (22-99)||(47981009-47981086)
chr1 (181-213)||(48239342-48239374)
chr1 (152-207)||(29204931-29204985)
chr1 (138-204)||(47981125-47981190)
chr1 (36-104)||(29204832-29204900)
[»] chr2 (10 HSPs)
chr2 (150-213)||(43032648-43032710)
chr2 (173-213)||(3642701-3642741)
chr2 (173-213)||(27191800-27191840)
chr2 (173-213)||(27841614-27841654)
chr2 (152-207)||(4987929-4987983)
chr2 (140-213)||(2867877-2867949)
chr2 (150-213)||(3943701-3943763)
chr2 (152-199)||(7342798-7342844)
chr2 (140-213)||(3846491-3846563)
chr2 (35-75)||(4987835-4987875)
[»] scaffold0472 (2 HSPs)
scaffold0472 (159-207)||(12562-12609)
scaffold0472 (66-106)||(12487-12527)
[»] scaffold0007 (1 HSPs)
scaffold0007 (172-213)||(241230-241271)


Alignment Details
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 36 - 213
Target Start/End: Complemental strand, 11569732 - 11569555
Alignment:
Q  36 aatttaacggggaaaagccaatttaactatgtgcgggtgtcagggaaatctgaatttttagtacgggggcgtggagaggggatgtttacacccactctgc 135  Q
    ||||||||||||||||| |||||||| || |||||||||||| |||||||||||||||||||||  ||||| |||   ||||||||||||||| ||||||    
T  11569732 aatttaacggggaaaagacaatttaattaggtgcgggtgtcatggaaatctgaatttttagtacaagggcgaggacgagggatgtttacacccgctctgc 11569633  T
Q  136 acccacccctgcctcgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaacc 213  Q
    ||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11569632 acccacctccgccccgcacccgctttttgaaattcaactttattaaattttataatcttattttcataagcaccaacc 11569555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 51241173 - 51241095
Alignment:
Q  134 gcacccacccctgcctcgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaacc 213  Q
    ||||||| |||  ||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||    
T  51241173 gcacccaaccccacctcgcacccgctttttgaaattta-ctttattaaattttataatcttatttccttaagcaccaacc 51241095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 37802275 - 37802347
Alignment:
Q  140 acccctgcctcgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaacc 213  Q
    ||||| ||| |||||||||||||| ||| |   |||| ||||||||||||||||||||||||||||||||||||    
T  37802275 acccccgccccgcacccgctttttaaaacttt-cttttttaaattttataatcttatttccataagcaccaacc 37802347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 211
Target Start/End: Original strand, 28710370 - 28710549
Alignment:
Q  36 aatttaacggggaaaagccaatttaactatgtgcgggtgtcagggaaatctgaatttttagtacgggggcgtg----gag--aggggatgtttacaccca 129  Q
    ||||||||||||||||||| ||||||| | ||||||||||  ||||||| |   |||||||||| |||||  |    |||  |||||||| ||| ||||     
T  28710370 aatttaacggggaaaagccgatttaacaaggtgcgggtgtgggggaaatttaggtttttagtacaggggccagaccggagccaggggatgcttatacccg 28710469  T
Q  130 ctctgcacccacccctgcctcgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaa 211  Q
    | | ||||||||||   ||  ||||||||| ||||||||| | ||| ||| |||||||||||| ||||||||||||||||||    
T  28710470 ccc-gcacccaccctcaccctgcacccgctgtttgaaatttacctt-atttaattttataatcatatttccataagcaccaa 28710549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 26595899 - 26595823
Alignment:
Q  135 cacccacccctgcctcgcacccgctttttgaaattcaactttattaaa-ttttataatcttatttccataagcaccaac 212  Q
    |||||||||| |||||| | ||| ||||| ||||| | |||||||||| ||||||||||||||||||||||| ||||||    
T  26595899 cacccacccc-gcctcgtatccgattttttaaattta-ctttattaaaattttataatcttatttccataagtaccaac 26595823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 213
Target Start/End: Original strand, 37648353 - 37648528
Alignment:
Q  36 aatttaacggggaaaagccaatttaactatgtgcgggtgtcagggaaatctgaatttttagtacgggggcgtggagaggggatgtttacacccactctgc 135  Q
    |||||||||| |||||||| ||||||||  ||||||||||  ||||||| || ||||||||||||||| || ||   ||||| | ||| || | | ||||    
T  37648353 aatttaacggagaaaagccgatttaactgggtgcgggtgtgggggaaatatggatttttagtacgggg-cggggccgggggagggttatactccccctgc 37648451  T
Q  136 acccacccctgcctcgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaacc 213  Q
    ||||||||| ||| |||||||||||||| ||||| | |||||||||||||||||||||||||||||||| ||||||||    
T  37648452 acccacccccgccccgcacccgctttttaaaattta-ctttattaaattttataatcttatttccataaacaccaacc 37648528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 8454569 - 8454631
Alignment:
Q  150 cgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaacc 213  Q
    |||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  8454569 cgcacccgttttttgaaattta-ctttattaaattttataatcttatttccataagcaccaacc 8454631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 8072127 - 8072056
Alignment:
Q  141 cccctgcctcgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaacc 213  Q
    |||| ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||| | ||||||||    
T  8072127 cccccgcctcgcacccgcttttggaaattta-ctttattaaattttataatcttatttccatcaacaccaacc 8072056  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 213
Target Start/End: Complemental strand, 319286 - 319209
Alignment:
Q  135 cacccacccctgcctcgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaacc 213  Q
    |||||||||| |||  ||||||||||||| ||||| | |||||||| ||||||||||||||||| ||||||||||||||    
T  319286 cacccacccccgccctgcacccgctttttaaaattta-ctttattacattttataatcttattttcataagcaccaacc 319209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 24500479 - 24500408
Alignment:
Q  138 ccacccctgcctcgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcacca 210  Q
    ||||||| ||| |||||||||||||||||||| |  |||||| |||||||||||||||||||||||| |||||    
T  24500479 ccacccccgccccgcacccgctttttgaaatttag-tttatttaattttataatcttatttccataaacacca 24500408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 25415702 - 25415663
Alignment:
Q  174 tttattaaattttataatcttatttccataagcaccaacc 213  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  25415702 tttattaaattttataattttatttccataagcaccaacc 25415663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 24500570 - 24500506
Alignment:
Q  36 aatttaacggggaaaagccaatttaactatgtgcgggtgtcagggaaatctgaatttttagtacg 100  Q
    |||||||| | |||||| | ||||||||  ||||||||||  ||||||||||| |||||||||||    
T  24500570 aatttaacagagaaaagtcgatttaactgggtgcgggtgtgggggaaatctgagtttttagtacg 24500506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 36 - 211
Target Start/End: Original strand, 2367542 - 2367710
Alignment:
Q  36 aatttaacggggaaaagccaatttaactatgtgcgggtgtcagggaaatctgaatttttagtacgggggcgtggagaggggatgtttacacccactctgc 135  Q
    ||||||||||| ||||||| |||||| |  ||||||||||  ||||||| || ||||||||||| ||||||      ||||||| ||||| |||| | |     
T  2367542 aatttaacgggaaaaagccgatttaattgggtgcgggtgtgggggaaatttggatttttagtaccggggcg------ggggatgcttacatccaccccgt 2367635  T
Q  136 acccacccctgcctcgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaa 211  Q
    ||||||||| | | |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  2367636 acccacccccgtcccgcacccgctttttgaaattta-ctttattaaattttataatcttatttccataagcaccaa 2367710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 29608910 - 29608988
Alignment:
Q  134 gcacccacccctgcctcgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaacc 213  Q
    ||||||||||  |||||||||||| ||||||||||| | |||||||||||||||||| ||||||||||||||||||||||    
T  29608910 gcacccacccgcgcctcgcacccgttttttgaaattta-ctttattaaattttataaacttatttccataagcaccaacc 29608988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 9874998 - 9875077
Alignment:
Q  133 tgcacccacccctgcctcgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaacc 213  Q
    |||||||||||| ||| ||||||  |||||||||||| | ||||||||||||| ||||||||||||||||||| |||||||    
T  9874998 tgcacccacccccgccccgcacctactttttgaaattta-ctttattaaatttcataatcttatttccataagtaccaacc 9875077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 33021163 - 33021224
Alignment:
Q  150 cgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaac 212  Q
    |||||||||||||| |||||   |||||||||||||||||||||||||| |||||||||||||    
T  33021163 cgcacccgctttttaaaatttt-ctttattaaattttataatcttattttcataagcaccaac 33021224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 4220565 - 4220605
Alignment:
Q  173 ctttattaaattttataatcttatttccataagcaccaacc 213  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  4220565 ctttcttaaattttataatcttatttccataagcaccaacc 4220605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 6857746 - 6857678
Alignment:
Q  35 aaatttaacggggaaaagccaatttaactatgtgcgggtgtcagggaaatctgaatttttagtacggggg 104  Q
    |||||||||||||||||| | ||||||||  ||||||||||  |||||||||| | ||||||||||||||    
T  6857746 aaatttaacggggaaaagtcgatttaactgggtgcgggtgt-ggggaaatctggaattttagtacggggg 6857678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 6857649 - 6857587
Alignment:
Q  150 cgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaacc 213  Q
    |||||||||||||| |||||  ||||||||| |||||||||| ||||||| ||||||| |||||    
T  6857649 cgcacccgctttttaaaatt-tactttattatattttataattttatttctataagcatcaacc 6857587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 18343509 - 18343443
Alignment:
Q  140 acccctgcctcgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagca 207  Q
    ||||| ||| |||||||||||||| ||| |   |||| ||||||||||||||||||||||||||||||    
T  18343509 acccccgccccgcacccgctttttaaaacttt-ctttcttaaattttataatcttatttccataagca 18343443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 213
Target Start/End: Complemental strand, 15438010 - 15437870
Alignment:
Q  66 gtgcgggtgtcagggaaatctgaatttttagtacgggggcgtggagaggggatgtttacacccactctgcacccacccctgcctcgcacccgctttttga 165  Q
    ||||||||||  ||||||||||||||||||||||||||||      |||||||| |||||||| | | ||||||||||| ||  |||||||| |||||||    
T  15438010 gtgcgggtgtgggggaaatctgaatttttagtacgggggc------aggggatgcttacacccgccccgcacccacccccgctccgcacccgatttttga 15437917  T
Q  166 aattcaactttattaaattttataatcttatttccataagcaccaacc 213  Q
    |||| | ||||||||||||||||||| ||||||||||||||| |||||    
T  15437916 aattta-ctttattaaattttataattttatttccataagcatcaacc 15437870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 208
Target Start/End: Original strand, 18275327 - 18275494
Alignment:
Q  39 ttaacggggaaaagccaatttaactatgtgcgggtgtcagggaaatctgaatttttagtacgggggcgtggagaggggatgtttacacccactctgcacc 138  Q
    |||||||||||||||  ||||||||  |||| ||||| ||| ||||||   ||||||||| ||||||   | | ||||||| ||| |||| |   |||||    
T  18275327 ttaacggggaaaagcttatttaactgggtgcaggtgtgaggaaaatctaggtttttagtatgggggcagag-gcggggatgcttatacccgcctcgcacc 18275425  T
Q  139 cacccctgcctcgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcac 208  Q
    |||||||||| |||||| ||||||||||||| | ||||||||||||||||||||||||||| ||||||||    
T  18275426 cacccctgccccgcacctgctttttgaaattta-ctttattaaattttataatcttatttctataagcac 18275494  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 32240445 - 32240351
Alignment:
Q  114 gggatgtttacacccactctgcacccacccctgcctcgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcacc 209  Q
    |||||| |||||||| | | |||||||||| |||| | |||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||    
T  32240445 gggatgcttacacccgccccgcacccacccttgccccacacccgctttttgaaattta-ctttattaaattttataattttatttccataagcacc 32240351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 21581732 - 21581858
Alignment:
Q  78 gggaaatctgaatttttagtacgggggcgtggagaggggatgtttacacccactctgcacccacccctgcctcgcacccgctttttgaaattcaacttta 177  Q
    |||||||||| |||||||||||||||| |       |||||| |||||||| | |  |||||||||| ||| |||||||||||||| ||||| | |||||    
T  21581732 gggaaatctggatttttagtacgggggtg-------gggatgcttacacccgccccacacccacccccgccccgcacccgctttttaaaattta-cttta 21581823  T
Q  178 ttaaattttataatcttatttccataagcaccaacc 213  Q
    |||||||||||||||||| |||||| ||||||||||    
T  21581824 ttaaattttataatctta-ttccattagcaccaacc 21581858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 27856458 - 27856403
Alignment:
Q  157 gctttttgaaattcaactttattaaattttataatcttatttccataagcaccaacc 213  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  27856458 gctttttgaaattta-ctttattaaattttataatcttatttccataagcaccaacc 27856403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 4733558 - 4733636
Alignment:
Q  133 tgcacccacccctgcctcgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaacc 213  Q
    |||||||||||| ||| |||||||| |||||||  || | |||||||||||||||||||||||||||||| ||||||||||    
T  4733558 tgcacccacccccgccccgcacccgttttttgagtttta-ctttattaaattttataatcttatttccat-agcaccaacc 4733636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 11735418 - 11735358
Alignment:
Q  152 cacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaacc 213  Q
    |||||||||||||||||| | |||||||| |||||||||||||||||| |||| ||||||||    
T  11735418 cacccgctttttgaaattta-ctttattatattttataatcttatttctataaacaccaacc 11735358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 35824365 - 35824315
Alignment:
Q  151 gcacccgctttttgaaattcaactttattaaattttataatcttatttccat 202  Q
    ||||||||||||||||||| | ||||||||||||||||||| ||||||||||    
T  35824365 gcacccgctttttgaaattta-ctttattaaattttataattttatttccat 35824315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 32858989 - 32859029
Alignment:
Q  173 ctttattaaattttataatcttatttccataagcaccaacc 213  Q
    |||| ||||| ||||||||||||||||||||||| ||||||    
T  32858989 ctttgttaaactttataatcttatttccataagccccaacc 32859029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 77 - 213
Target Start/End: Complemental strand, 17806305 - 17806178
Alignment:
Q  77 agggaaatctgaatttttagtacgggggcgtggagaggggatgtttacacccactctgcacccacccctgcctcgcacccgctttttgaaattcaacttt 176  Q
    |||||||| ||| |||||||||||||||||       |||||| |||||||| | ||||| ||||||| ||| |||||||||||||||||||| | ||||    
T  17806305 agggaaatatgagtttttagtacgggggcg-------gggatgcttacacccgccctgcatccacccccgcc-cgcacccgctttttgaaattta-cttt 17806215  T
Q  177 attaaattttataatcttatttccataagcaccaacc 213  Q
    |||||| ||||||||||||||||||||||||||||||    
T  17806214 attaaaatttataatcttatttccataagcaccaacc 17806178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 10533105 - 10533174
Alignment:
Q  143 cctgcctcgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaacc 213  Q
    |||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  10533105 cctgccccgcacccgctttttgaaattta-ctttattaaattttataatcttatttccataagcaccaacc 10533174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 213
Target Start/End: Original strand, 21526012 - 21526193
Alignment:
Q  36 aatttaacggggaaaagccaatttaactatgtgcgggtgtcagggaaatctgaatttttagtacgggggcgtggagag-----gggatgtttacacccac 130  Q
    |||||||| |||||||||| |||||||   ||||||||||  ||||||| || |||||||||||||||||| |   ||     | |||| ||||||||||    
T  21526012 aatttaacagggaaaagccgatttaaccgggtgcgggtgtgggggaaatttggatttttagtacgggggcgggtccagatgcagagatgcttacacccac 21526111  T
Q  131 tctgcacccacccctgcctcgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaacc 213  Q
     | |||||| |||| ||| |||||||||||||| |||||   |||| ||||| ||||||||||||||| ||||||||||||||    
T  21526112 cccgcaccctcccccgccccgcacccgctttttaaaatttt-ctttgttaaactttataatcttattttcataagcaccaacc 21526193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 213
Target Start/End: Original strand, 9320196 - 9320365
Alignment:
Q  35 aaatttaacggggaaaagccaatttaactatgtgcgggtgtcagggaaatctgaatttttagtacgggggcgtggagaggggatgtttacacccactctg 134  Q
    |||||||||||||||||||||||||||||| |||| |||||  || |||| ||  ||||||||||||||| |      ||||||| ||| || | | |      
T  9320196 aaatttaacggggaaaagccaatttaactaggtgcaggtgtggggaaaatatgg-tttttagtacgggggag------ggggatgcttaaactcgcccca 9320288  T
Q  135 cacccacccctgcctcgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaacc 213  Q
     ||||||||| |||   |||||||||||| |||||  |||| |||||||||||||||||||||||||||||||||||||    
T  9320289 tacccacccccgcccaacacccgctttttaaaatt--acttcattaaattttataatcttatttccataagcaccaacc 9320365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 26607749 - 26607811
Alignment:
Q  150 cgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaacc 213  Q
    ||||||| |||||||||||| | |||||||||||||||||||||||||| ||||||||||||||    
T  26607749 cgcacccactttttgaaattta-ctttattaaattttataatcttattttcataagcaccaacc 26607811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 213
Target Start/End: Complemental strand, 43366839 - 43366657
Alignment:
Q  36 aatttaacggggaaaagccaatttaactatgtgcgggtgtcagggaaatctgaatttttagtacgggggcgtgga--ga----ggggatgtttacaccca 129  Q
    ||||||||||||||||||||||||||||  ||||||||||  || |||| || | |||||||| ||||| | ||   ||    ||||||| |||| |||     
T  43366839 aatttaacggggaaaagccaatttaactgggtgcgggtgtggggaaaatttggagttttagtatgggggtggggccggatgtgggggatgcttacgccct 43366740  T
Q  130 ctctgcacccacccctgcctcgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaacc 213  Q
    | | || |||||||| ||| |||| |||||||||  ||||   |||||||||||||||||||||||||| | ||||||||||||    
T  43366739 ccccgctcccacccccgccccgcaaccgctttttttaatttt-ctttattaaattttataatcttattttcttaagcaccaacc 43366657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 54480305 - 54480343
Alignment:
Q  172 actttattaaattttataatcttatttccataagcacca 210  Q
    |||||||||||||||||||||||||||||||||||||||    
T  54480305 actttattaaattttataatcttatttccataagcacca 54480343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 10608789 - 10608691
Alignment:
Q  113 ggggatgtttacacccactctgcacccacccctgcctcgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaac 212  Q
    ||||||| ||| |||| | | ||||||||||| ||| |||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||    
T  10608789 ggggatgcttatacccgccccgcacccacccccgcc-cgcacccgctttttaaaattta-ctttattaaattttataatcttatttccataagcaccaac 10608692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 8386856 - 8386914
Alignment:
Q  154 cccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaacc 213  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  8386856 cccgctttttgaaatttaa-tttattaaattttataatcttatttccataagcaccaacc 8386914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 213
Target Start/End: Original strand, 40112263 - 40112340
Alignment:
Q  135 cacccacccctgcctcgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaacc 213  Q
    ||||||||  |||| |||| ||||||||||||||| | |||||||||||||||||||||||||| ||||||||| ||||    
T  40112263 cacccaccgttgccccgcatccgctttttgaaattta-ctttattaaattttataatcttattttcataagcacgaacc 40112340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 284258 - 284207
Alignment:
Q  150 cgcacccgctttttgaaattcaactttattaaattttataatcttatttccat 202  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  284258 cgcacccgctttttgaaattta-ctttattaaattttataatcttatttccat 284207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 631619 - 631670
Alignment:
Q  150 cgcacccgctttttgaaattcaactttattaaattttataatcttatttccat 202  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  631619 cgcacccgctttttgaaattta-ctttattaaattttataatcttatttccat 631670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 817431 - 817482
Alignment:
Q  150 cgcacccgctttttgaaattcaactttattaaattttataatcttatttccat 202  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  817431 cgcacccgctttttgaaattta-ctttattaaattttataatcttatttccat 817482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 18431971 - 18432012
Alignment:
Q  172 actttattaaattttataatcttatttccataagcaccaacc 213  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  18431971 acttttttaaattttataatcttatttccataagcaccaacc 18432012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 1748496 - 1748574
Alignment:
Q  134 gcacccacccctgcctcgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaacc 213  Q
    |||||||||| ||||||||| ||||||||||||||| | |||||||||||||||||||||||||| |||||| |||||||    
T  1748496 gcacccacccttgcctcgcatccgctttttgaaattta-ctttattaaattttataatcttattttcataagtaccaacc 1748574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 29172728 - 29172666
Alignment:
Q  150 cgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaacc 213  Q
    |||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||    
T  29172728 cgcacccgctttttgaaattta-ctttattatattttataatcttatttccataagcaccaacc 29172666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 933178 - 933240
Alignment:
Q  150 cgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaacc 213  Q
    ||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||| |||||    
T  933178 cgcacccgctttttggaattta-ctttattaaattttataatcttatttccataagcatcaacc 933240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 15965008 - 15964968
Alignment:
Q  172 actttattaaattttataatcttatttccataagcaccaac 212  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  15965008 actttattaaattttataatcttatttccataagcaccaac 15964968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 6342208 - 6342147
Alignment:
Q  150 cgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaac 212  Q
    ||||||| ||||||||| || | ||||| ||||||||||||||||||||||||||||||||||    
T  6342208 cgcacccactttttgaagttta-ctttactaaattttataatcttatttccataagcaccaac 6342147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 47335857 - 47335816
Alignment:
Q  172 actttattaaattttataatcttatttccataagcaccaacc 213  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  47335857 actttattaagttttataatcttatttccataagcaccaacc 47335816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 47981009 - 47981086
Alignment:
Q  22 ccgccctcaccctaaatttaacggggaaaagccaatttaactatgtgcgggtgtcagggaaatctgaatttttagtac 99  Q
    |||||| | |||||||||||||| | |||| |||||||||||  ||||||||||  ||||||| ||| ||||||||||    
T  47981009 ccgcccccgccctaaatttaacgtgaaaaaaccaatttaactgggtgcgggtgtgggggaaatatgagtttttagtac 47981086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 48239342 - 48239374
Alignment:
Q  181 aattttataatcttatttccataagcaccaacc 213  Q
    |||||||||||||||||||||||||||||||||    
T  48239342 aattttataatcttatttccataagcaccaacc 48239374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 29204931 - 29204985
Alignment:
Q  152 cacccgctttttgaaattcaactttattaaattttataatcttatttccataagca 207  Q
    ||||||| |||||||||| |  |||||||||||||||||||||||||| |||||||    
T  29204931 cacccgccttttgaaattgat-tttattaaattttataatcttatttcgataagca 29204985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 47981125 - 47981190
Alignment:
Q  138 ccacccctgcctcgcacccgctttttgaaattcaactttattaaattttataatcttatttccataa 204  Q
    ||||||| ||| |||||| |||||||||||||  |||||||||| | |||||||||| |||||||||    
T  47981125 ccacccccgccccgcaccggctttttgaaatt-tactttattaattgttataatcttgtttccataa 47981190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 29204832 - 29204900
Alignment:
Q  36 aatttaacggggaaaagccaatttaactatgtgcgggtgtcagggaaatctgaatttttagtacggggg 104  Q
    ||||||||||||||||||| |||||| |  ||| ||||||  ||||||| || |||||||||| |||||    
T  29204832 aatttaacggggaaaagccgatttaattgggtgtgggtgtgggggaaatttggatttttagtatggggg 29204900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 43032710 - 43032648
Alignment:
Q  150 cgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaacc 213  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||| ||||    
T  43032710 cgcacccgctttttgaaattta-ctttattaaattttataatcttattcccataagcactaacc 43032648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 3642741 - 3642701
Alignment:
Q  173 ctttattaaattttataatcttatttccataagcaccaacc 213  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  3642741 ctttcttaaattttataatcttatttccataagcaccaacc 3642701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 27191840 - 27191800
Alignment:
Q  173 ctttattaaattttataatcttatttccataagcaccaacc 213  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  27191840 ctttcttaaattttataatcttatttccataagcaccaacc 27191800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 27841654 - 27841614
Alignment:
Q  173 ctttattaaattttataatcttatttccataagcaccaacc 213  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  27841654 ctttcttaaattttataatcttatttccataagcaccaacc 27841614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 4987929 - 4987983
Alignment:
Q  152 cacccgctttttgaaattcaactttattaaattttataatcttatttccataagca 207  Q
    ||||||| |||||||||| | ||||||||||||||||||| |||||||||||||||    
T  4987929 cacccgcattttgaaattta-ctttattaaattttataattttatttccataagca 4987983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 2867877 - 2867949
Alignment:
Q  140 acccctgcctcgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaacc 213  Q
    ||||| ||| |||||||||||||| ||| |   |||| |||| |||||||||||||||||||||||||||||||    
T  2867877 acccccgccccgcacccgctttttaaaacttt-cttttttaagttttataatcttatttccataagcaccaacc 2867949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 3943701 - 3943763
Alignment:
Q  150 cgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaacc 213  Q
    |||||||| ||||| ||||| | || ||| ||||||||| ||||||||||||||||||||||||    
T  3943701 cgcacccgttttttaaaattta-ctgtataaaattttatgatcttatttccataagcaccaacc 3943763  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 7342798 - 7342844
Alignment:
Q  152 cacccgctttttgaaattcaactttattaaattttataatcttatttc 199  Q
    |||||||||||||||||| | |||||||||||||||||| ||||||||    
T  7342798 cacccgctttttgaaattta-ctttattaaattttataaccttatttc 7342844  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 3846491 - 3846563
Alignment:
Q  140 acccctgcctcgcacccgctttttgaaattcaactttattaaattttataatcttatttccataagcaccaacc 213  Q
    ||||| ||| |||||||| ||||||||||| | |||||||||| ||| ||||| |||||| |||||||| ||||    
T  3846491 acccccgccccgcacccgttttttgaaattta-ctttattaaaatttttaatcatatttctataagcacaaacc 3846563  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 4987835 - 4987875
Alignment:
Q  35 aaatttaacggggaaaagccaatttaactatgtgcgggtgt 75  Q
    ||||||||||||||||| |||||||||||| |||| |||||    
T  4987835 aaatttaacggggaaaaaccaatttaactaggtgcaggtgt 4987875  T

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Target: scaffold0472 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 12562 - 12609
Alignment:
Q  159 tttttgaaattcaactttattaaattttataatcttatttccataagca 207  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||    
T  12562 tttttgaaattta-ctttattaaattttataatcttatttccataagca 12609  T

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Target: scaffold0472; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 12487 - 12527
Alignment:
Q  66 gtgcgggtgtcagggaaatctgaatttttagtacgggggcg 106  Q
    ||||||||||  |||||||||| ||||||||||||||||||    
T  12487 gtgcgggtgtgggggaaatctggatttttagtacgggggcg 12527  T

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Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 241271 - 241230
Alignment:
Q  172 actttattaaattttataatcttatttccataagcaccaacc 213  Q
    |||||| |||||||||||||||||||||||||| ||||||||    
T  241271 actttagtaaattttataatcttatttccataatcaccaacc 241230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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