View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3676_low_34 (Length: 236)
Name: NF3676_low_34
Description: NF3676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3676_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 20889018 - 20888796
Alignment:
| Q |
2 |
aattgatataatgccccggattgacgattttaatttccttacatgctcataaaatctcataatattaaagaatataatgctactacttttattcaacctc |
101 |
Q |
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| T |
20889018 |
aattgatataatgccccagatttacgaatttaatttcctttcatgctcataaaatctcataatattaaagaatataatgctactacttttattcaacctc |
20888919 |
T |
|
| Q |
102 |
ggtttccttattttcccaaatttcctaact----tctcttgttaccatttttattttattccgacactagctaaacattgaaaaataataagactatttt |
197 |
Q |
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||||||||||||| ||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20888918 |
attttccttattttctcaaatttcctagcttcactctcttgttacgattttcattttattccgacactagctaaacattgaaaaataataagactatttt |
20888819 |
T |
|
| Q |
198 |
aagcttgtaaaataacttgaaag |
220 |
Q |
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||||||||||||||||||||||| |
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| T |
20888818 |
aagcttgtaaaataacttgaaag |
20888796 |
T |
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