View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3676_low_4 (Length: 424)
Name: NF3676_low_4
Description: NF3676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3676_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 188 - 408
Target Start/End: Original strand, 5935263 - 5935483
Alignment:
| Q |
188 |
catagtccttctattgatcataattccaattcctcttgacttttctatttcaagtaaagcatttcaaaaaataccaatgaaagttggttgatcagttgat |
287 |
Q |
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| T |
5935263 |
catagtgcttctattgatcataattccaattcctcttgacttttctatttcaagtaaagcattttaaaaaatacaaacgaaagttggttgatcagttgat |
5935362 |
T |
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| Q |
288 |
aatgagttgactaatatccatgaagatgtggatttaacttttcctattgacgtaaatactccgttgatggataaataaaaatatctcgatcaatattttt |
387 |
Q |
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| T |
5935363 |
aatgagttgactaatatccatgaagatgtggatttaattttcactgtcgacgtaaatactccgttgatggataagtaaaaatatctcgatcagtattttt |
5935462 |
T |
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| Q |
388 |
tgagcttcgaagcctttcttg |
408 |
Q |
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| T |
5935463 |
tgagcttcgaagcctttcttg |
5935483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 5935086 - 5935198
Alignment:
| Q |
11 |
caaagggataggaaccttcggattcaaaatacatacacaaacacaaacaaggcacacgtgaagcctaagttgtcatttgtcagccaaatttcaccacata |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
5935086 |
caaagggataggaaccttcggattcaaaatacatacacaaacacaaacaaggcacacgtgaagctttagttgtcatttgtcagccaaatttcaccacata |
5935185 |
T |
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| Q |
111 |
acatcatcatatc |
123 |
Q |
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| T |
5935186 |
acatcatcatatc |
5935198 |
T |
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