View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3676_low_7 (Length: 376)
Name: NF3676_low_7
Description: NF3676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3676_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 12 - 360
Target Start/End: Complemental strand, 16386250 - 16385902
Alignment:
| Q |
12 |
tcatcacataccatactttcactcttcacccatcaaccatgtccttaaccactcttctccccttcctcatccttatactcttccccacatcaacacacac |
111 |
Q |
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| T |
16386250 |
tcatcacataccacactttcactcttcacccatcaaccatgtccttaaccactcttctccccttcctcgtccttctactcttccccacatcaacacacac |
16386151 |
T |
|
| Q |
112 |
atgtcctactaataacacaacaaaaacacacccttctccatgtcctccatttcaatccaccccaccttttcctttctccaccaccccaggttgtggccac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16386150 |
atgtcctactaataacacaacaaaaacacacccttctccatgccctccatttcaatccaccccaccttttcctttctccaccaccccaggttgtggccac |
16386051 |
T |
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| Q |
212 |
ccttcttttcaactaacatgctcaacccctcactctttcataaccatcaacaacctcactttctcaatcctctcttacaaaccaaactccacttcaatca |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16386050 |
ccttcttttcaactaacatgctcaacccctcactctttcataaccatcaacaacctcactttctcaatcctctcttacaaacctaactccacttcaatca |
16385951 |
T |
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| Q |
312 |
tcctctcacctcacaaccccatttcacaactaaacaacaataccaaatg |
360 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
16385950 |
tcctctcacctcacaaccccatttcacaacaaaacaacaataccaaatg |
16385902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 197 - 292
Target Start/End: Complemental strand, 27708600 - 27708505
Alignment:
| Q |
197 |
ccaggttgtggccacccttcttttcaactaacatgctcaacccctcactctttcataaccatcaacaacctcactttctcaatcctctcttacaaa |
292 |
Q |
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|||||||||| |||||||||||| ||| ||| |||||||||| |||||||||||| ||||| ||||||||| ||||||| |||||||||| |||| |
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| T |
27708600 |
ccaggttgtgaccacccttctttccaattaatgtgctcaacccgtcactctttcatcaccataaacaacctctctttctccatcctctctttcaaa |
27708505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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