View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3676_low_9 (Length: 343)
Name: NF3676_low_9
Description: NF3676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3676_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 40116325 - 40116637
Alignment:
| Q |
1 |
gctctaatcgacagatgtgatgatagcgtgcaagatcaattgatcttgtcttgtccagtaattaaaatctggatcagtttgggtaggacacggttttgtg |
100 |
Q |
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| T |
40116325 |
gctctgatcgacagatgtgatgatagcgtgcaagatcaattgatcttgtcttgtccagtaattaaaatctggatcagtttgggtaggacacggttttgtg |
40116424 |
T |
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| Q |
101 |
ccatcaatgaaccctttaagatcatatccaatgaaaagagcattcatttggacattccaagctgggtaatttgtacttttgagtttaagtgaatgttggg |
200 |
Q |
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| T |
40116425 |
ccatagatgaaccctttaagatcatatccaatgaaaagagcattcatttggacattccaagctgggtaatttgtacttttgagtttaagtgaatgttggg |
40116524 |
T |
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| Q |
201 |
tattgaggacagttacagtgttggttccaaccatgaaactgcaaccattgttgttgttatttgtggaagagctattgttattagtatttgcggaagacat |
300 |
Q |
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| T |
40116525 |
tattgaggacagttacagtgttggttccaaccatgaaactgcaaccattgttgttgttatttgtggaagagctattgttattagtatttgcggaagacat |
40116624 |
T |
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| Q |
301 |
ggtgaaagggggg |
313 |
Q |
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| T |
40116625 |
ggtgaaagggggg |
40116637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 9039356 - 9039499
Alignment:
| Q |
7 |
atcgacagatgtgatgatagcgtgcaagatcaattgatcttgtcttgtccagtaattaaaatctggatcagtttgggtaggacacggttttgtgccatca |
106 |
Q |
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| T |
9039356 |
atcgacagatgtgataatagcatgtagtatgagttggtcctgtcttgtccagtagttgtaatctggatctgttttggcagggcacaattttgtaccattg |
9039455 |
T |
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| Q |
107 |
atgaaccctttaagatcatatccaatgaaaagagcattcatttg |
150 |
Q |
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| T |
9039456 |
ataaaacctgtgaggtcatatccaatgaatagtgcattcatttg |
9039499 |
T |
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