View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3677_high_10 (Length: 220)
Name: NF3677_high_10
Description: NF3677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3677_high_10 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: scaffold0219 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 11049 - 10864
Alignment:
| Q |
19 |
aggtccatgattctgaacattggattgcctttgtgtgtaagggttgaaatcatgttcccactttgagaggcacaagaaatctggatgaagagagatcatc |
118 |
Q |
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| T |
11049 |
aggtccatgattctgaacattggattgcctttgtgtgtaagggttgaaatcatgttcccactttgagaggcataagaaatctggatgaagagagatcatc |
10950 |
T |
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| Q |
119 |
aacctccattggccaaaatccttctaaactgtctgcaacttcgacgagagatcacaagaggttaaagatttgtttcccttattcat |
204 |
Q |
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| T |
10949 |
aacctccattggccaaaatccttctaaactgtctgcaacttcgatgagagatcacaagaggttaaagatttgtttcccttattcat |
10864 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 15698022 - 15697967
Alignment:
| Q |
116 |
atcaacctccattggccaaaatccttctaaactgtctgcaacttcgacgagagatc |
171 |
Q |
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| T |
15698022 |
atcaacctccattgtccaaaatccttccaaattgtttgcagcttcgacgagagatc |
15697967 |
T |
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