View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3677_high_6 (Length: 262)
Name: NF3677_high_6
Description: NF3677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3677_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 5768470 - 5768236
Alignment:
| Q |
13 |
aatatctacagaatatagtggtcaatgaattagttcaattcggacaatgatgtccgcgatttcaaatgtccattttacgagtcatagtataagaaatcat |
112 |
Q |
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| T |
5768470 |
aatatctacagaatatagtggtcaatgaattagttcaattcggacaatgatgtccgcgatttcaaatgtccattttacaagtcatagtataagaaatcat |
5768371 |
T |
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| Q |
113 |
ccgagtatgtatgacacaagaatggtaatcgatgaaagtaattaaaggcaaagcaatgaaagacaatacaggttaaaacttgcattacacaataacttaa |
212 |
Q |
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| T |
5768370 |
ccgagtatgtatgacacaagaatggtaatcgatgaaagtaattaaaggcaaagcaatgaaagacaatacaggttaaaacttgcattacacaataacttaa |
5768271 |
T |
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| Q |
213 |
gcaattatcatgcgaagagtgatgagcatcttact |
247 |
Q |
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| T |
5768270 |
gcaattatcatgcgaagagtgatgagcatcttact |
5768236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 100 - 247
Target Start/End: Original strand, 14002454 - 14002601
Alignment:
| Q |
100 |
tataagaaatcatccgagtatgtatgacacaagaatggtaatcgatgaaagtaattaaaggcaaagcaatgaaagacaatacaggttaaaacttgcatta |
199 |
Q |
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| T |
14002454 |
tataagaaattatccgagtatgtatgacacaagaatggtaatcgatgaaagtaattaaaggcaaagcaatgaaagacaatacaggttaaaacttgcatta |
14002553 |
T |
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| Q |
200 |
cacaataacttaagcaattatcatgcgaagagtgatgagcatcttact |
247 |
Q |
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| T |
14002554 |
cacaataacttaagcaattatcatgcgaagagtgatgagcatcttact |
14002601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 14002347 - 14002453
Alignment:
| Q |
23 |
gaatatagtggtcaatgaattagttcaattcggacaatgatgtccgcgatttcaaatgtccattttacgagtcatagtataagaaatcatccgagtatgt |
122 |
Q |
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| T |
14002347 |
gaatatagtggtcaatgaattagttcaattcggacaatgatgtccgcgatttcaaatgtccattttacgagtcatagtataagaaatcatccgagtatgt |
14002446 |
T |
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| Q |
123 |
atgacac |
129 |
Q |
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| T |
14002447 |
atgacac |
14002453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 225
Target Start/End: Complemental strand, 8446556 - 8446483
Alignment:
| Q |
152 |
aattaaaggcaaagcaatgaaagacaatacaggttaaaacttgcattacacaataacttaagcaattatcatgc |
225 |
Q |
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| T |
8446556 |
aatttaaggtaaagcaatgaaaagcaaaacaagttaaaacttgcgttacacaaaaacttaagcaattatcatgc |
8446483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 225
Target Start/End: Complemental strand, 8184394 - 8184360
Alignment:
| Q |
191 |
cttgcattacacaataacttaagcaattatcatgc |
225 |
Q |
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| T |
8184394 |
cttgcattacacgataacttaagcaattatcatgc |
8184360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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