View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3677_high_8 (Length: 241)

Name: NF3677_high_8
Description: NF3677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3677_high_8
NF3677_high_8
[»] chr6 (9 HSPs)
chr6 (1-225)||(21266966-21267190)
chr6 (1-128)||(21136633-21136758)
chr6 (22-147)||(33701544-33701666)
chr6 (26-104)||(21311248-21311326)
chr6 (52-105)||(33714812-33714865)
chr6 (30-70)||(21299083-21299123)
chr6 (187-225)||(21136781-21136819)
chr6 (68-104)||(21217204-21217240)
chr6 (68-147)||(21314451-21314528)
[»] scaffold0076 (1 HSPs)
scaffold0076 (55-111)||(12762-12818)
[»] chr5 (1 HSPs)
chr5 (22-66)||(21657796-21657840)


Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 21266966 - 21267190
Alignment:
Q  1 ctagttgttattcttcctctttgctcatgtttctagttgtttgatatgtcatggtgttgagaatttatattctttagaactttgaatttgttaacttttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21266966 ctagttgttattcttcctctttgctcatgtttctagttgtttgatatgtcatggtgttgagaatttatattctttagaactttgaatttgttaacttttg 21267065  T
Q  101 gattaatatggggacttcattgcatagattgtggcaagagaaagagacaccaagggnnnnnnnnnntgaatagaaagtctaatgttatgagaatgatgaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||          ||||||||||||||||||||||||||||||||||    
T  21267066 gattaatatggggacttcattgcatagattgtggcaagagaaagagacactaagggaaaaaaaaattgaatagaaagtctaatgttatgagaatgatgaa 21267165  T
Q  201 aatgattttttagatgcacataaaa 225  Q
    |||||||||||||||||||||||||    
T  21267166 aatgattttttagatgcacataaaa 21267190  T

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Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 21136633 - 21136758
Alignment:
Q  1 ctagttgttattcttcctctttgctcatgtttctagttgtttgatatgtcatggtgttgagaatttatattctttagaactttgaatttgttaacttttg 100  Q
    ||||||||||  |||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  21136633 ctagttgtta--cttcctctttgctcatgtttctggttgtttgatatgtattggtgttgagaatttatattcttcagaactttgaatttgttaaattttg 21136730  T
Q  101 gattaatatggggacttcattgcataga 128  Q
    |||||||||||||||||||||| |||||    
T  21136731 gattaatatggggacttcattgtataga 21136758  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 147
Target Start/End: Original strand, 33701544 - 33701666
Alignment:
Q  22 tgctcatgtttctagttgtttgatatgtcatggtgttgagaatttatattctttagaactttgaatttgttaacttttggattaatatggggacttcatt 121  Q
    ||||||||||||||| ||||| ||||||| ||||||| ||||||| |||||| ||||| |||||  ||||||| ||||||||||  |||||   ||| ||    
T  33701544 tgctcatgtttctag-tgttttatatgtcttggtgtttagaatttctattctatagaattttgatcttgttaaattttggattaggatggg--tttcgtt 33701640  T
Q  122 gcatagattgtggcaagagaaagaga 147  Q
    |||||||||||| | | |||||||||    
T  33701641 gcatagattgtgactatagaaagaga 33701666  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 21311248 - 21311326
Alignment:
Q  26 catgtttctagttgtttgatatgtcatggtgttgagaatttatattctttagaactttgaatttgttaacttttggatt 104  Q
    ||||||| |||||||||||| ||||  ||||||||| | || ||||||||||||||||||| || |||| |||||||||    
T  21311248 catgtttgtagttgtttgatgtgtctcggtgttgagcaattctattctttagaactttgaactttttaaattttggatt 21311326  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 33714812 - 33714865
Alignment:
Q  52 tggtgttgagaatttatattctttagaactttgaatttgttaacttttggatta 105  Q
    ||||||||||| ||| ||||||||||||||||||||||||||| |||| |||||    
T  33714812 tggtgttgagattttctattctttagaactttgaatttgttaaattttagatta 33714865  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 21299083 - 21299123
Alignment:
Q  30 tttctagttgtttgatatgtcatggtgttgagaatttatat 70  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  21299083 tttctagttgtttgatatgtcttggtgttgagaatttatat 21299123  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 21136781 - 21136819
Alignment:
Q  187 atgagaatgatgaaaatgattttttagatgcacataaaa 225  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  21136781 atgagaatgatgaaaatgcttttttagatgcacataaaa 21136819  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 21217204 - 21217240
Alignment:
Q  68 tattctttagaactttgaatttgttaacttttggatt 104  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  21217204 tattctttagaactttgaacttgttaaattttggatt 21217240  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 21314451 - 21314528
Alignment:
Q  68 tattctttagaactttgaatttgttaacttttggattaatatggggacttcattgcatagattgtggcaagagaaagaga 147  Q
    ||||||||||||||| ||| | ||| | |||||||||||||| ||  |||| || | ||||||||| |||||||||||||    
T  21314451 tattctttagaacttagaactggttcaattttggattaatatagg--cttctttacgtagattgtgacaagagaaagaga 21314528  T

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Target: scaffold0076 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 12762 - 12818
Alignment:
Q  55 tgttgagaatttatattctttagaactttgaatttgttaacttttggattaatatgg 111  Q
    |||||||||||| ||||||||||||||||||| ||||||| ||||||||||| ||||    
T  12762 tgttgagaatttgtattctttagaactttgaacttgttaaattttggattaaaatgg 12818  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 21657840 - 21657796
Alignment:
Q  22 tgctcatgtttctagttgtttgatatgtcatggtgttgagaattt 66  Q
    ||||||||||||||||||||| |||  || |||||||||||||||    
T  21657840 tgctcatgtttctagttgttttatacatcttggtgttgagaattt 21657796  T

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