View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3677_low_1 (Length: 638)
Name: NF3677_low_1
Description: NF3677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3677_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 537; Significance: 0; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 37 - 629
Target Start/End: Original strand, 39584459 - 39585049
Alignment:
| Q |
37 |
tgtatatcattacaactagctacttagttatggctgtgagttgaagccagcattctagccaaagtacactaaaaatgttttttattgtaaccttatacct |
136 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39584459 |
tgtatatcattacaactagctactaagttatggctgtgagttgaggccagcattcaagccaaagtacactaaaaatgttttttattgtaaccttatacct |
39584558 |
T |
|
| Q |
137 |
ttggggtccccagttagggattgcattaagatactcttgattcgtatattgctacttgcaagagccaaattagaaaatctagcctttcgagatttacaag |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39584559 |
ttggggtccccagttagggattgcattaagatactcttgattcgtatattgctacttgcaagagccaaattagaaaatctagcctttcgagatttacaag |
39584658 |
T |
|
| Q |
237 |
gttttctttggtaaaaatataatcttgaacacaatctaatgcgcatgatttaagattaagttggtgtccatgtattcacaaaaagcacaactgagatact |
336 |
Q |
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||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
39584659 |
gttttctttagtaaaa-tataatcttgaacacaatctaatgcgcatgatttaagattaagttggtgtccatatattcacaaaaggcacaactgagataca |
39584757 |
T |
|
| Q |
337 |
tggcaattttatacaatactatatcatactacatatttaaattagtgttcaaagataatagagtgcatctcggaaagcatttccaattaacttttctcaa |
436 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39584758 |
tggcaattttatacaatactatatcatactacatatt-aaattagtgttcaaagataatagagtgcatctcggaaagcatttccaatttacttttctcaa |
39584856 |
T |
|
| Q |
437 |
ctctatataatacatcactagcaacaactcaaactcaaacaaactacttcaatatattcttagctttaatttcctctctttttctaactgcaacacataa |
536 |
Q |
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| T |
39584857 |
ctctatataatacatcactagcaacaactcaaactcaaacaaaccacttcaatatattcttagctttaatttcctctccttttctaactgcaacacataa |
39584956 |
T |
|
| Q |
537 |
ctagacacatattcctaactatactctcaaattttcaatggatccatcccatataccagcttatgcaaacttcagctgtgaactgagaataat |
629 |
Q |
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| T |
39584957 |
ctagacacatattcctaactatactctcaaattttcaatggatccatcccatataccagcttatgcaaacttcagctgtgaactgagaataat |
39585049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 128 - 360
Target Start/End: Original strand, 39580919 - 39581161
Alignment:
| Q |
128 |
cttatacctttggggtccccagttagggattgcattaagatactcttgattcgtatattgctacttgcaagagccaaattagaaaatctagcctttcgag |
227 |
Q |
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||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
39580919 |
cttatacctttggggtccccagttacggattgcatcaagatactcgtgattcgtatattgctacttgcaagagcaaaattgtaaaatctagcctttcgag |
39581018 |
T |
|
| Q |
228 |
atttacaaggttttctttggtaa-aaatataatcttgaacacaatct-------aatgcgcatgatttaagattaagttggtgtccatgtattcacaaaa |
319 |
Q |
| |
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||| || |||||||| ||| |||| ||||| |||||||||| |||| |||||||| || ||||||||||| | || ||| ||||||| |
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| T |
39581019 |
attctaaactttttctttaataaggtatatgatcttcaacacaatctcatgtgcaatgtgcatgattcaatattaagttggtattaatatatgcacaaaa |
39581118 |
T |
|
| Q |
320 |
agcacaactgagatacttg-gcaa-ttttatacaatactatat |
360 |
Q |
| |
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||||||||||||||||| | ||| |||||||||||||||||| |
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| T |
39581119 |
agcacaactgagatactagatcaatttttatacaatactatat |
39581161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 496 - 629
Target Start/End: Complemental strand, 39569199 - 39569063
Alignment:
| Q |
496 |
ttagctttaatttcctctct--ttttctaactgcaacacataactagacacatattcctaa---ctatactctcaaattttcaatggatccatcccatat |
590 |
Q |
| |
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|||||||| ||||||||||| ||||||| || |||||||||| |||||| || |||||| ||| |||||||| |||||||||||||||| |||||| |
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| T |
39569199 |
ttagctttcatttcctctctctttttctagctacaacacataattagacaaat--tcctaattgctaaactctcaatttttcaatggatccattccatat |
39569102 |
T |
|
| Q |
591 |
accagcttatgcaaacttcagctgtgaactgagaataat |
629 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||| |
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|
| T |
39569101 |
acctgcttatgcaaacttcagctgtgaactaagaataat |
39569063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 410 - 629
Target Start/End: Complemental strand, 39572099 - 39571880
Alignment:
| Q |
410 |
aaagcatttccaattaacttttctcaactctatataatacatcactagcaacaactcaaactcaaacaaactacttcaatatattcttagctttaatttc |
509 |
Q |
| |
|
||||||||||||||| |||||| ||||| |||||||||||||||| |||||| |||||||||||| ||| ||| ||||||||| ||| |||||| |
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| T |
39572099 |
aaagcatttccaatttactttt-tcaacactatataatacatcacctacaacaattcaaactcaaaccaac--ctttttcatattcttaccttcaatttc |
39572003 |
T |
|
| Q |
510 |
ctctcttttt-ctaactgcaacacataactagacacatattcctaacta----tactctcaaattttcaatggatccatcccatataccagcttatgcaa |
604 |
Q |
| |
|
|||||||||| ||| || |||||||||||||||| || ||||||||| ||||||||| |||||||||||||| |||||| | ||||||| || |
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| T |
39572002 |
ctctcttttttctagctaaaacacataactagacaaat--tcctaactagctatactctcaataactcaatggatccatctcatataactgcttatgtaa |
39571905 |
T |
|
| Q |
605 |
acttcagctgtgaactgagaataat |
629 |
Q |
| |
|
| |||||||| |||||||||||||| |
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| T |
39571904 |
atttcagctgcgaactgagaataat |
39571880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 195 - 334
Target Start/End: Complemental strand, 39562102 - 39561964
Alignment:
| Q |
195 |
caagagccaaattagaaaatctagcctttcgagatttacaaggttttctttggtaaaaatataatcttgaacacaatctaatgcgcatgatttaagatta |
294 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||| |||||||||||| ||| | ||||||||| |||||||||| | | ||||| |||||||||| |
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| T |
39562102 |
caagagccaaattggaaaatccagcctttcgagattctaaaggttttctttaataaga-tataatcttcaacacaatctcacgtgcatggtttaagatta |
39562004 |
T |
|
| Q |
295 |
agttggtgtccatgtattcacaaaaagcacaactgagata |
334 |
Q |
| |
|
|| |||| | || ||||||||||| |||||||||||||| |
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| T |
39562003 |
agatggtattaatatattcacaaaaggcacaactgagata |
39561964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 195 - 334
Target Start/End: Complemental strand, 39566781 - 39566643
Alignment:
| Q |
195 |
caagagccaaattagaaaatctagcctttcgagatttacaaggttttctttggtaaaaatataatcttgaacacaatctaatgcgcatgatttaagatta |
294 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||| | || |||||||||| ||||||||| ||| |||| |||||||||| |
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| T |
39566781 |
caagagccaaattggaaaatctagcctttcgagattctaaaggttttctttaat-aagatataatcttctacacaatctcatgtgcatagtttaagatta |
39566683 |
T |
|
| Q |
295 |
agttggtgtccatgtattcacaaaaagcacaactgagata |
334 |
Q |
| |
|
|| |||| | || |||||||||| ||||||||| ||||| |
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| T |
39566682 |
agatggtattaatatattcacaaagagcacaacttagata |
39566643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 555 - 626
Target Start/End: Complemental strand, 39566476 - 39566405
Alignment:
| Q |
555 |
ctatactctcaaattttcaatggatccatcccatataccagcttatgcaaacttcagctgtgaactgagaat |
626 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| ||| | ||||||||||||||||| | |||||||||||| |
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|
| T |
39566476 |
ctatactctcaatttttcgatggatccatcccacatatctgcttatgcaaacttcagttttgaactgagaat |
39566405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 253 - 354
Target Start/End: Complemental strand, 39560735 - 39560633
Alignment:
| Q |
253 |
atataatcttgaacacaatctaatgcgcatgatttaagattaagttggtgtccatgtattcacaaaaagcacaactgagatacttg-gcaattttataca |
351 |
Q |
| |
|
|||||||||| |||| ||||| ||| |||||||| |||| ||||||||| | || ||||||||||| |||||||||||||||| | |||||||||||| |
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|
| T |
39560735 |
atataatcttcaacataatctgatgtgcatgattcaagaataagttggtattaatatattcacaaaaggcacaactgagatactggatcaattttataca |
39560636 |
T |
|
| Q |
352 |
ata |
354 |
Q |
| |
|
||| |
|
|
| T |
39560635 |
ata |
39560633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 558 - 626
Target Start/End: Original strand, 39581339 - 39581407
Alignment:
| Q |
558 |
tactctcaaattttcaatggatccatcccatataccagcttatgcaaacttcagctgtgaactgagaat |
626 |
Q |
| |
|
||||||||| |||||||||||||||| ||| ||| | ||||||||||||||||| | |||||||||||| |
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|
| T |
39581339 |
tactctcaatttttcaatggatccatgccacatatctgcttatgcaaacttcagttttgaactgagaat |
39581407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 39569582 - 39569503
Alignment:
| Q |
99 |
agtacactaaaaatgttttttattgtaaccttatacctttggggtccccagttagggattgcattaagatactcttgatt |
178 |
Q |
| |
|
||||||||||||| || |||||| ||| |||||||||||||| |||||||||| ||| |||| |||||||| |||||| |
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|
| T |
39569582 |
agtacactaaaaaccttgtttattctaatcttatacctttgggatccccagttatggaatgcagcaagatactgttgatt |
39569503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 567 - 629
Target Start/End: Complemental strand, 39561755 - 39561693
Alignment:
| Q |
567 |
attttcaatggatccatcccatataccagcttatgcaaacttcagctgtgaactgagaataat |
629 |
Q |
| |
|
|||||||||||||||||| | | ||| || |||||||||||||| ||||||||||||||||| |
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|
| T |
39561755 |
attttcaatggatccatcgaaaacacctgcatatgcaaacttcagttgtgaactgagaataat |
39561693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 336
Target Start/End: Complemental strand, 39572228 - 39572145
Alignment:
| Q |
253 |
atataatcttgaacacaatctaatgcgcatgatttaagattaagttggtgtccatgtattcacaaaaagcacaactgagatact |
336 |
Q |
| |
|
||||||| || |||||||||| ||| ||||||| ||||||||||||||| || ||||| ||||| | |||||||||||||| |
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|
| T |
39572228 |
atataatattcaacacaatctcatgtgcatgatataagattaagttggtagtaatatattcgcaaaatgaacaactgagatact |
39572145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 408 - 476
Target Start/End: Complemental strand, 39561906 - 39561839
Alignment:
| Q |
408 |
ggaaagcatttccaattaacttttctcaactctatataatacatcactagcaacaactcaaactcaaac |
476 |
Q |
| |
|
||||||||||||||||| || ||| || || ||||||||| |||||| ||||||||||||||||||| |
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|
| T |
39561906 |
ggaaagcatttccaatttaccttt-tccacactatataatgcatcacatacaacaactcaaactcaaac |
39561839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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