View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3677_low_15 (Length: 241)
Name: NF3677_low_15
Description: NF3677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3677_low_15 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 21266966 - 21267190
Alignment:
| Q |
1 |
ctagttgttattcttcctctttgctcatgtttctagttgtttgatatgtcatggtgttgagaatttatattctttagaactttgaatttgttaacttttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21266966 |
ctagttgttattcttcctctttgctcatgtttctagttgtttgatatgtcatggtgttgagaatttatattctttagaactttgaatttgttaacttttg |
21267065 |
T |
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| Q |
101 |
gattaatatggggacttcattgcatagattgtggcaagagaaagagacaccaagggnnnnnnnnnntgaatagaaagtctaatgttatgagaatgatgaa |
200 |
Q |
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| T |
21267066 |
gattaatatggggacttcattgcatagattgtggcaagagaaagagacactaagggaaaaaaaaattgaatagaaagtctaatgttatgagaatgatgaa |
21267165 |
T |
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| Q |
201 |
aatgattttttagatgcacataaaa |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
21267166 |
aatgattttttagatgcacataaaa |
21267190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 21136633 - 21136758
Alignment:
| Q |
1 |
ctagttgttattcttcctctttgctcatgtttctagttgtttgatatgtcatggtgttgagaatttatattctttagaactttgaatttgttaacttttg |
100 |
Q |
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|||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
21136633 |
ctagttgtta--cttcctctttgctcatgtttctggttgtttgatatgtattggtgttgagaatttatattcttcagaactttgaatttgttaaattttg |
21136730 |
T |
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| Q |
101 |
gattaatatggggacttcattgcataga |
128 |
Q |
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| T |
21136731 |
gattaatatggggacttcattgtataga |
21136758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 147
Target Start/End: Original strand, 33701544 - 33701666
Alignment:
| Q |
22 |
tgctcatgtttctagttgtttgatatgtcatggtgttgagaatttatattctttagaactttgaatttgttaacttttggattaatatggggacttcatt |
121 |
Q |
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| T |
33701544 |
tgctcatgtttctag-tgttttatatgtcttggtgtttagaatttctattctatagaattttgatcttgttaaattttggattaggatggg--tttcgtt |
33701640 |
T |
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| Q |
122 |
gcatagattgtggcaagagaaagaga |
147 |
Q |
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|||||||||||| | | ||||||||| |
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| T |
33701641 |
gcatagattgtgactatagaaagaga |
33701666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 21311248 - 21311326
Alignment:
| Q |
26 |
catgtttctagttgtttgatatgtcatggtgttgagaatttatattctttagaactttgaatttgttaacttttggatt |
104 |
Q |
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||||||| |||||||||||| |||| ||||||||| | || ||||||||||||||||||| || |||| ||||||||| |
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| T |
21311248 |
catgtttgtagttgtttgatgtgtctcggtgttgagcaattctattctttagaactttgaactttttaaattttggatt |
21311326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 33714812 - 33714865
Alignment:
| Q |
52 |
tggtgttgagaatttatattctttagaactttgaatttgttaacttttggatta |
105 |
Q |
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| T |
33714812 |
tggtgttgagattttctattctttagaactttgaatttgttaaattttagatta |
33714865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 21299083 - 21299123
Alignment:
| Q |
30 |
tttctagttgtttgatatgtcatggtgttgagaatttatat |
70 |
Q |
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| T |
21299083 |
tttctagttgtttgatatgtcttggtgttgagaatttatat |
21299123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 21136781 - 21136819
Alignment:
| Q |
187 |
atgagaatgatgaaaatgattttttagatgcacataaaa |
225 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |
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| T |
21136781 |
atgagaatgatgaaaatgcttttttagatgcacataaaa |
21136819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 21217204 - 21217240
Alignment:
| Q |
68 |
tattctttagaactttgaatttgttaacttttggatt |
104 |
Q |
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||||||||||||||||||| ||||||| ||||||||| |
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| T |
21217204 |
tattctttagaactttgaacttgttaaattttggatt |
21217240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 21314451 - 21314528
Alignment:
| Q |
68 |
tattctttagaactttgaatttgttaacttttggattaatatggggacttcattgcatagattgtggcaagagaaagaga |
147 |
Q |
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| T |
21314451 |
tattctttagaacttagaactggttcaattttggattaatatagg--cttctttacgtagattgtgacaagagaaagaga |
21314528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 12762 - 12818
Alignment:
| Q |
55 |
tgttgagaatttatattctttagaactttgaatttgttaacttttggattaatatgg |
111 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||| ||||||||||| |||| |
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| T |
12762 |
tgttgagaatttgtattctttagaactttgaacttgttaaattttggattaaaatgg |
12818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 21657840 - 21657796
Alignment:
| Q |
22 |
tgctcatgtttctagttgtttgatatgtcatggtgttgagaattt |
66 |
Q |
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| T |
21657840 |
tgctcatgtttctagttgttttatacatcttggtgttgagaattt |
21657796 |
T |
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