View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3677_low_2 (Length: 606)
Name: NF3677_low_2
Description: NF3677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3677_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 31 - 590
Target Start/End: Original strand, 10396734 - 10397293
Alignment:
| Q |
31 |
ttattctgcaaacacatcaaattattattttaaaatgtgatcattgaatttgggaacgacacattgggcagggatattgtggattcgtaatgtcacaatg |
130 |
Q |
| |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10396734 |
ttattctgcaaacacatcaaattattattttatattgtgatcattgaatttgggaacgacacattgggcagggatattgtggattggtaatgtcacaatg |
10396833 |
T |
|
| Q |
131 |
cataatccaattagtaacacaatgctcatggaaaacatgcatgcacttggtacgaacaatttgttcttcttctgatccacaacaaaattcctccaaacaa |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10396834 |
cataatccaattagtaacacaatgctcatggaaaacatgcatgcacttggtacgaacaatgtgttcttcttctgatccacaacaaaattcctccaaacaa |
10396933 |
T |
|
| Q |
231 |
attgcacattctttcattgaagaactagttgcaatattgtccaatttgaccttctccaggattgtactagatcccttttggccaaccaatacatccatct |
330 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10396934 |
attgcacattctttcattgaagaactagttgcaatatcgttcaattcgaccttctccaggattgtactagatcccttttggccaaccaatacatccatct |
10397033 |
T |
|
| Q |
331 |
tcaatattctatctccttcaaagttgactctgctcatatgcctagcattgtcacccataagaaatagagcgtcttccaacgcttcatcaggaagcaccga |
430 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10397034 |
tcaatattctatctccttcaaagttgactctgctcatatgcttagcattgtcacccataagaaatagagcgtcttccaacgcttcatcaggaagcaccga |
10397133 |
T |
|
| Q |
431 |
gagagcgttgcgtaacaaggtattggacaaactatctggatccacggattccaaatcgtcgttatcacataagatgttacgaggaatgatgaaggaataa |
530 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
10397134 |
gagagcgttgcgtaacaaggtattggacaaactacctggatccacagattccaaatcgtcgtaatcgcataagatgttacgaggaatgatgaaggaataa |
10397233 |
T |
|
| Q |
531 |
tgattgaatgaaggggagtggaagtagtgacgtttaatgaggaaacattcatgtggataa |
590 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10397234 |
tgattgaatgaaggggagtggaagtagtgacgtttaatgaggaaacattcatgtggataa |
10397293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 31 - 590
Target Start/End: Original strand, 10406954 - 10407513
Alignment:
| Q |
31 |
ttattctgcaaacacatcaaattattattttaaaatgtgatcattgaatttgggaacgacacattgggcagggatattgtggattcgtaatgtcacaatg |
130 |
Q |
| |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10406954 |
ttattctgcaaacacatcaaattattattttatattgtgatcattgaatttgggaacgacacattgggcagggatattgtggattggtaatgtcacaatt |
10407053 |
T |
|
| Q |
131 |
cataatccaattagtaacacaatgctcatggaaaacatgcatgcacttggtacgaacaatttgttcttcttctgatccacaacaaaattcctccaaacaa |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10407054 |
cataatccaattagtaacacaatgctcatggaaaacatgcatgcacttggtacgaacaatgtgttcttcttctgatccacaacaaaattcctccaaacaa |
10407153 |
T |
|
| Q |
231 |
attgcacattctttcattgaagaactagttgcaatattgtccaatttgaccttctccaggattgtactagatcccttttggccaaccaatacatccatct |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10407154 |
attgcacattctttcattgaagaactagttgcaatatcgtccaattcgaccttctccaggattgtactagatcccttttggccaaccaatacatccatct |
10407253 |
T |
|
| Q |
331 |
tcaatattctatctccttcaaagttgactctgctcatatgcctagcattgtcacccataagaaatagagcgtcttccaacgcttcatcaggaagcaccga |
430 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10407254 |
tcaatattctatctcctccaaagttgactctgctcatatgcctagcattgtcacccataagaaatagagcgtcttccaacgcttcatcaggaagcaccga |
10407353 |
T |
|
| Q |
431 |
gagagcgttgcgtaacaaggtattggacaaactatctggatccacggattccaaatcgtcgttatcacataagatgttacgaggaatgatgaaggaataa |
530 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
10407354 |
gagagcgttgcgtaacaaggtattggacaaactatctgaatccacggattcaaaattgtcgtaatcacataagatgtttcgaggaatgatgaaggaataa |
10407453 |
T |
|
| Q |
531 |
tgattgaatgaaggggagtggaagtagtgacgtttaatgaggaaacattcatgtggataa |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10407454 |
tgattgaatgaaggggagtggaagtagtgacgtttaatgaggaaacattcatgtggataa |
10407513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 391 - 590
Target Start/End: Original strand, 10401959 - 10402158
Alignment:
| Q |
391 |
gaaatagagcgtcttccaacgcttcatcaggaagcaccgagagagcgttgcgtaacaaggtattggacaaactatctggatccacggattccaaatcgtc |
490 |
Q |
| |
|
||||||| | |||||||||| |||||||| |||||||||||| ||||||||| |||| | ||||||||||||||||| ||||||| | || |||||||| |
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|
| T |
10401959 |
gaaatagcgtgtcttccaacacttcatcaagaagcaccgagaaagcgttgcgcaacatgacattggacaaactatctgtatccacgaagtcaaaatcgtc |
10402058 |
T |
|
| Q |
491 |
gttatcacataagatgttacgaggaatgatgaaggaataatgattgaatgaaggggagtggaagtagtgacgtttaatgaggaaacattcatgtggataa |
590 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10402059 |
gtaatcacataagatgttacgaggaatgatgaaggaataatgattaaatgaaggggagtggaagtagtgacgtttaatgaggaaacattcatgtggataa |
10402158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 321 - 587
Target Start/End: Original strand, 10429343 - 10429615
Alignment:
| Q |
321 |
acatccatcttcaatattctatctccttcaaagttgactctgctcatatgcctagcattgtcacccataagaaatagagcgtcttccaacgcttcatcag |
420 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||| || |||||| |||||| | ||||||||||||| ||| | ||||||||| |||||| || |
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|
| T |
10429343 |
acatccatctccaatattctatatccttcaaagttgactgtgttcatatacctagcgtactcacccataagaagtagggtttcttccaacacttcatgag |
10429442 |
T |
|
| Q |
421 |
gaag---caccga---gagagcgttgcgtaacaaggtattggacaaactatctggatccacggattccaaatcgtcgttatcacataagatgttacgagg |
514 |
Q |
| |
|
|||| |||||| || || ||| || || ||||||| ||| ||||||||| ||||||||||||| || || |||| ||||||||||||||||| ||| |
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|
| T |
10429443 |
gaagatccaccgacaagaaagtgttacgcaaaaaggtataggataaactatcttgatccacggattcaaactcatcgtaatcacataagatgttaccagg |
10429542 |
T |
|
| Q |
515 |
aatgatgaaggaataatgattgaatgaaggggagtggaagtagtgacgtttaatgaggaaacattcatgtgga |
587 |
Q |
| |
|
||| | |||| ||| || |||||||||| ||||| |||| |||| |||||||||||||||||||||||||| |
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|
| T |
10429543 |
aataaggaagtcatagtggttgaatgaagtcgagtgaaagtggtgaagtttaatgaggaaacattcatgtgga |
10429615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 190
Target Start/End: Original strand, 10381345 - 10381478
Alignment:
| Q |
57 |
attttaaaatgtgatcattgaatttgggaacgacacattgggcagggatattgtggattcgtaatgtcacaatgcataatccaattagtaacacaatgct |
156 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||||||| |||||||| |||| | |||| ||||| ||| ||||||| ||| || |||||| || | |
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|
| T |
10381345 |
atttgaaaatatgatcattgaatttcggaacgacacaatgggcaggaatataatcgattgctaatgcaacactgcataagccaccgagcaacacattgtt |
10381444 |
T |
|
| Q |
157 |
catggaaaacatgcatgcacttggtacgaacaat |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
10381445 |
gatggaaaacatgcatgcacttggtacgaacaat |
10381478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 10429132 - 10429226
Alignment:
| Q |
146 |
aacacaatgctcatggaaaacatgcatgcacttggtacgaacaatttgttcttcttctgatccacaacaaaattcctccaaacaaattgcacatt |
240 |
Q |
| |
|
||||||||| ||||| |||| |||||| ||||||||||||| ||| ||| | ||||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
10429132 |
aacacaatgttcatgaaaaaaatgcatacacttggtacgaataatgtgtggtacttctgatccatcacaaaattcctccaaacaaattgaacatt |
10429226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 10396687 - 10396730
Alignment:
| Q |
10 |
attattctggactaaattcctttattctgcaaacacatcaaatt |
53 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10396687 |
attattctggactaaattcctttattctgcaaacacatcaaatt |
10396730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 10406907 - 10406950
Alignment:
| Q |
10 |
attattctggactaaattcctttattctgcaaacacatcaaatt |
53 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10406907 |
attattctggactaaattcctttattctgcaaacacatcaaatt |
10406950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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