View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3677_low_3 (Length: 462)
Name: NF3677_low_3
Description: NF3677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3677_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 7 - 446
Target Start/End: Complemental strand, 5661523 - 5661089
Alignment:
| Q |
7 |
tagattatacttatctcacataccaattctaaattatcgggacatctctccctaaatcaggagggttaacnnnnnnnn--tatgattgtttgttctacta |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
5661523 |
tagattatacttatctcacataccaattctaaattatcgggacatctttccctaaatcaggagggttaacacaaaaaaaatatgattgtttgttctgcta |
5661424 |
T |
|
| Q |
105 |
aaaattgatggcattttgtaacccagaggagttacttgnnnnnnnnnggttacatgataaattacttgttaacacaaggcaacaactgttttttaaatta |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5661423 |
aaaattgatggcattttgtaacccagaggagttacttgtttttttt-ggttacatgatgaattacttgttaacacaaggcaacaactgttttttaaatta |
5661325 |
T |
|
| Q |
205 |
taaaagattaaagcaatcgcaaaaggttctaagaaacacaaaagtgagatctcttagcaataaaggttgccccacacactggataagagctagctacaca |
304 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5661324 |
taaaagattaaagcaatcgcaataggttctaggaaacacaaaagtgagatctcttagcaataaaggtagccccacacactggataagagctagctacaca |
5661225 |
T |
|
| Q |
305 |
acaaatgactccactcaccagggaaaaggatgatgagtggaaaagtcatagattaagaataagaacattaggtgaattaacaaccaataatcatatagat |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
5661224 |
acaaatgactccactcaccagggaaaaggatgatgagtggaaaagtcatagattaagaat------attaggttaattaacaaccaataatcatatagat |
5661131 |
T |
|
| Q |
405 |
aggtgcccgattgagccatgatgttattagaattgtaatttg |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5661130 |
aggtgcccgattgagccatgatgttattagaattgtgatttg |
5661089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University