View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3677_low_9 (Length: 273)
Name: NF3677_low_9
Description: NF3677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3677_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 82 - 268
Target Start/End: Original strand, 15998353 - 15998539
Alignment:
| Q |
82 |
gtatctgtaaagcattaaatagacctatagcaaacattggaagaagagttttctctgcttaatcattctcacctgtttcaaaaatggaagcaaatcgttc |
181 |
Q |
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| T |
15998353 |
gtatctgtaaagcattaaatagacctatagcaaacattggaagaagagttttctctgcttaatcattctcacctgtttcaaaaatggaagcaaatcgttc |
15998452 |
T |
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| Q |
182 |
atatcttccatttttgacagcaagtaaaatgcttcttcaaataaaccctctttacaaagccccccattgatcatagtcatattcttc |
268 |
Q |
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| T |
15998453 |
atatcttccatttttgacagcaagtaaaatgcttcttcaaataaaccctctttacaaagcaccccattgatcatagtcatatacttc |
15998539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 15998142 - 15998208
Alignment:
| Q |
18 |
taatgtgagtaactatcaaaagaaaaagacactagatggcagccattcaaatctaaaacaacatgta |
84 |
Q |
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| T |
15998142 |
taatgtgagtaactatcaaaagaaaaagacactagatggcagccattcaaatctaaaacaacatgta |
15998208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 14651838 - 14651769
Alignment:
| Q |
27 |
taactatcaaaagaaaaagacactagatggcagccattcaaatctaaaacaacatgtatctgtaaagcat |
96 |
Q |
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| T |
14651838 |
taactatcaaaagaaaaagagactcgatggttgccattaaaatctaaaacaagatgtatctagaaagcat |
14651769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 14661629 - 14661560
Alignment:
| Q |
27 |
taactatcaaaagaaaaagacactagatggcagccattcaaatctaaaacaacatgtatctgtaaagcat |
96 |
Q |
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| T |
14661629 |
taactatcaaaagaaaaagagactcgatggttgccattaaaatctaaaacaagatgtatctagaaagcat |
14661560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 14651641 - 14651587
Alignment:
| Q |
183 |
tatcttccatttttgacagcaagtaaaatgcttcttcaaataaaccctctttaca |
237 |
Q |
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| T |
14651641 |
tatcttccatttttgacagcaaaacaaacgcttcttcaaacaaaccctctttaca |
14651587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 14661432 - 14661378
Alignment:
| Q |
183 |
tatcttccatttttgacagcaagtaaaatgcttcttcaaataaaccctctttaca |
237 |
Q |
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| T |
14661432 |
tatcttccatttttgacagcaaaacaaacgcttcttcaaacaaaccctctttaca |
14661378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 17251638 - 17251580
Alignment:
| Q |
185 |
tcttccatttttgacagcaagtaaaatgcttcttcaaataaaccctctttacaaagccc |
243 |
Q |
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| T |
17251638 |
tcttccatttttgacagcaaggtcaatgcttcatcaaacaagctctctttacaaagccc |
17251580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 29949571 - 29949625
Alignment:
| Q |
185 |
tcttccatttttgacagcaagtaaaatgcttcttcaaataaaccctctttacaaa |
239 |
Q |
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| T |
29949571 |
tcttccatttttgacagtaaggacaatgcctcgtcaaataaaccttctttacaaa |
29949625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 29953368 - 29953422
Alignment:
| Q |
185 |
tcttccatttttgacagcaagtaaaatgcttcttcaaataaaccctctttacaaa |
239 |
Q |
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| T |
29953368 |
tcttccatttttgacagtaaggacaatgcctcgtcaaataaaccttctttacaaa |
29953422 |
T |
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