View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3678_high_1 (Length: 796)

Name: NF3678_high_1
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3678_high_1
NF3678_high_1
[»] chr1 (11 HSPs)
chr1 (9-408)||(51762796-51763189)
chr1 (465-737)||(51761895-51762167)
chr1 (15-402)||(51854744-51855128)
chr1 (15-408)||(51858404-51858793)
chr1 (85-408)||(51756620-51756933)
chr1 (225-288)||(51782803-51782866)
chr1 (227-285)||(51407546-51407604)
chr1 (215-408)||(51381319-51381512)
chr1 (225-273)||(51832377-51832425)
chr1 (16-48)||(51829572-51829604)
chr1 (15-52)||(51221417-51221454)
[»] chr6 (2 HSPs)
chr6 (79-408)||(4182865-4183190)
chr6 (79-408)||(4743709-4744034)
[»] chr3 (6 HSPs)
chr3 (15-48)||(747352-747385)
chr3 (16-48)||(9608570-9608602)
chr3 (233-273)||(23197024-23197064)
chr3 (16-47)||(7334484-7334515)
chr3 (225-283)||(2492086-2492144)
chr3 (225-283)||(2631361-2631419)
[»] chr4 (1 HSPs)
chr4 (224-273)||(20016184-20016233)


Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 9 - 408
Target Start/End: Complemental strand, 51763189 - 51762796
Alignment:
Q  9 agcaaagggaatatttgtgagtgacactgttaattggttgttatttagtgatcatggtttttggtgggttattgtttctcttgctttggagaatgagttg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  51763189 agcaaagggaatatttgtgagtgacactgttaattggttgttatttagtgatcatggtttttggtgggttattgtttctcttggtttggagaatgagttg 51763090  T
Q  109 tatcaagagctttctcaccctcattatgattaccaacctggaaatggcataattaccttgggggtgttgagggattgtttgcgcannnnnnnctaatagt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||| |||       ||||||||    
T  51763089 tatcaagagctttctcaccctcattatgattaccaacctggaaatggcataatta------gggtgttgagggattgtttgtgcatttttttctaatagt 51762996  T
Q  209 gccagcttttcttatttttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcaaataggagattgtggtttttatt 308  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  51762995 gacagcttttcttatttttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcaaataggagatcgtggtttttatt 51762896  T
Q  309 ccttaaccaaggcattatatatatctgaagatgaccaagtgctgatgtatattctgaagatggggaaatttagtttggttgtctatggttccataaatga 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51762895 ccttaaccaaggcattatatatatctgaagatgaccaagtgctgatgtatattctgaagatggggaaatttagtttggttgtctatggttccataaatga 51762796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 465 - 737
Target Start/End: Complemental strand, 51762167 - 51761895
Alignment:
Q  465 aatggaatggattagatggatttggtgggcatagttctaatttaattaacaacaattatgaactagttcagaattgttttcatcctagtttggagaattc 564  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51762167 aatggaatggattagatggatttggtgggcatagttctaatttaattaacaacaattatgaactagttcagaattgttttcatcctagtttggagaattc 51762068  T
Q  565 tatcaaagatgttgctaaaatggttagattttttctcctaattaggaagttatatgctaatgattacagaacattgtgaatatttgtgcattcgtttact 664  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51762067 tatcaaagatgttgctaaaatggttagattttttctcctaattaggaagttatatgctaatgattacagaacattgtgaatatttgtgcattcgtttact 51761968  T
Q  665 tttgcgcaatggtagaaaccagaagatcttagtgagattttcatggttatgtgtgtttcttccatttggcctt 737  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51761967 tttgcgcaatggtagaaaccagaagatcttagtgagattttcatggttatgtgtgtttcttccatttggcctt 51761895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 15 - 402
Target Start/End: Original strand, 51854744 - 51855128
Alignment:
Q  15 gggaatatttgtgagtgacactgttaattggttgttatttagtgatcatggtttttg-gtgggttattgtttctcttgctttggagaatgagttgtatca 113  Q
    ||||||||||||| | ||||| |||||||||||| ||| |  ||||| | ||||||| | |||| ||||||||||||| ||||||||||| |||||||||    
T  51854744 gggaatatttgtgtgcgacacggttaattggttggtatatgatgatcctagtttttgagagggtcattgtttctcttgatttggagaatgggttgtatca 51854843  T
Q  114 agagctttctcaccctcattatgattaccaacctggaaatggcataattaccttgggggtgttgagggattgtttgcgcannnnnnnctaatagtgccag 213  Q
    |||| |||||||||||| |||||| ||| |||||| |||| ||||   |||||||||||||||||||||||||||| |||       ||| |||||  |     
T  51854844 agagttttctcaccctctttatgactacgaacctgcaaatcgcat---taccttgggggtgttgagggattgtttgtgcacttttt-ctagtagtgagaa 51854939  T
Q  214 cttttcttatttttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcaaataggagattgtggtttttattcctta 313  Q
     |||||| || ||||||||||||| ||||||||||||| | |||||||||||||||||||| ||||||||||||| ||||  ||||||| ||||  ||      
T  51854940 gttttctgatgtttggatcatgaaagaatatggaaatgtagaatcttggactaaattgttatgtgttcctcaaatgggaggctgtggttgttatatctat 51855039  T
Q  314 accaaggcattatatatatctgaagatgaccaagtgctgatgtatattctgaagatggggaaatttagtttggttgtctatggttccat 402  Q
    |||||  ||||||||||||||||||||||||||||||||| |||| || | ||||||||||| |||||||||| |||||||| ||||||    
T  51855040 accaaaccattatatatatctgaagatgaccaagtgctgacgtattttttcaagatggggaagtttagtttggctgtctatgattccat 51855128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 15 - 408
Target Start/End: Original strand, 51858404 - 51858793
Alignment:
Q  15 gggaatatttgtgagtgacactgttaattggttgttatttagtgatcatggtttttggtgggttattgtttctcttgctttggagaatgagttgtatcaa 114  Q
    |||||||| | ||||||||||||||||||||||| ||| |  ||||| | |||||  | |||| ||||||||||||| ||||||||||||||||| ||||    
T  51858404 gggaatatctttgagtgacactgttaattggttggtatatcatgatcgtagttttgcgagggtcattgtttctcttgatttggagaatgagttgtgtcaa 51858503  T
Q  115 gagctttctcaccctcattatgattaccaacctggaaatggcataattaccttgggggtgttgagggattgtttgcgcannnnnnnctaatagtgccagc 214  Q
    ||||||| |||||||| |||| ||||| ||||||||| | ||||   | ||||||||||| |||||||||| ||| |||       || |||||| ||      
T  51858504 gagctttttcaccctctttataattacaaacctggaacttgcat---tgccttgggggtgctgagggattgcttgtgcatttttt-ctcatagtgacaag 51858599  T
Q  215 ttttcttatttttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcaaataggagattgtggtttttattccttaa 314  Q
    |||||| || ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||| |||||||| ||||  ||  |    
T  51858600 ttttctgatgtttggatcatgaaggaatatggaaatgtagaatcttggactaaattgttaagtgttcctcaaatgggaggttgtggttgttatatctata 51858699  T
Q  315 ccaaggcattatatatatctgaagatgaccaagtgctgatgtatattctgaagatggggaaatttagtttggttgtctatggttccataaatga 408  Q
    |||| | |||||||||||||||||||| || | ||||||| ||| || | ||||  ||||||||||| |||| |||||||| |||||| |||||    
T  51858700 ccaaagtattatatatatctgaagatggcctaatgctgatatattttttcaagagagggaaatttaggttggctgtctatgattccattaatga 51858793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 85 - 408
Target Start/End: Complemental strand, 51756933 - 51756620
Alignment:
Q  85 tctcttgctttggagaatgagttgtatcaagagctttctcaccctcattatgattaccaacctggaaatggcataattaccttgggggtgttgagggatt 184  Q
    ||||||| ||||||||| ||||||| |||||||||||  ||||||| || |||| ||||||  | ||||  ||| ||   ||||||||||||||||||||    
T  51756933 tctcttgatttggagaaggagttgtctcaagagcttttgcaccctctttgtgataaccaacaagaaaattacattat---cttgggggtgttgagggatt 51756837  T
Q  185 gtttgcgcannnnnnnctaatagtgccagcttttcttatttttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctc 284  Q
    ||||| |||       || | |||| ||  |||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51756836 gtttgtgcatttttt-ctcaaagtgacaagttttttgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctc 51756738  T
Q  285 aaataggagattgtggtttttattccttaaccaaggcattatatatatctgaagatgaccaagtgctgatgtatattctgaagatggggaaatttagttt 384  Q
    |||| |||||      |  ||||  ||  |||||  |||||||||| ||||| ||||||||||||||||||||| || |||||| ||| |||||||||||    
T  51756737 aaatgggaga------tcattatatctataccaaaccattatatatttctgaggatgaccaagtgctgatgtattttgtgaagaggggaaaatttagttt 51756644  T
Q  385 ggttgtctatggttccataaatga 408  Q
    || | |||||| ||||||||||||    
T  51756643 ggctttctatgattccataaatga 51756620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 51782803 - 51782866
Alignment:
Q  225 tttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcaaat 288  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||| |||||||||||| ||||    
T  51782803 tttggattatgaaggaatatggaaatgaacaatcttggaataaattattaagtgttcctaaaat 51782866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 51407604 - 51407546
Alignment:
Q  227 tggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctca 285  Q
    ||||| |||||||||||||| |||| ||| |||||||||||||||||||||||||||||    
T  51407604 tggattatgaaggaatatgggaatgaacagtcttggactaaattgttaagtgttcctca 51407546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 215 - 408
Target Start/End: Complemental strand, 51381512 - 51381319
Alignment:
Q  215 ttttcttatttttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcctcaaataggagattgtggtttttattccttaa 314  Q
    |||||| || ||||||| ||||| ||||||||||||| | | ||||||||||||||||| ||| ||||| | || | || | ||||||||  |  ||       
T  51381512 ttttctgatatttggattatgaaagaatatggaaatgaagagtcttggactaaattgttcagtattccttacatggaaggtcgtggttttcttggctatt 51381413  T
Q  315 ccaaggcattatatatatctgaagatgaccaagtgctgatgtatattctgaagatggggaaatttagtttggttgtctatggttccataaatga 408  Q
     | || || ||||||| || ||||||||||||||  ||||| |  |||| |||||||||||||| |||||| ||||||||| ||||| ||||||    
T  51381412 gccagtcagtatatatttcggaagatgaccaagttttgatgcagtttctaaagatggggaaattcagtttgcttgtctatgattccaaaaatga 51381319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 51832377 - 51832425
Alignment:
Q  225 tttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 273  Q
    ||||||| ||||| ||||||||||||| |||||||||||||||||||||    
T  51832377 tttggataatgaaagaatatggaaatgaacaatcttggactaaattgtt 51832425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 51829572 - 51829604
Alignment:
Q  16 ggaatatttgtgagtgacactgttaattggttg 48  Q
    |||||||||||||||||||||||||||||||||    
T  51829572 ggaatatttgtgagtgacactgttaattggttg 51829604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 51221454 - 51221417
Alignment:
Q  15 gggaatatttgtgagtgacactgttaattggttgttat 52  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  51221454 gggaatatttgtgagtgacacggttaactggttgttat 51221417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 9e-60; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 79 - 408
Target Start/End: Complemental strand, 4183190 - 4182865
Alignment:
Q  79 attgtttctcttgctttggagaatgagttgtatcaagagctttctcaccctcattatgattaccaacctggaaatggcataattaccttgggggtgttga 178  Q
    ||||||||||||  |||| |||| ||||  |||||||||||||||||||||| |||||||  |||| ||| || || ||    |||||||||| ||||||    
T  4183190 attgtttctcttcatttgcagaaggagtcttatcaagagctttctcaccctctttatgatatccaatctgaaactgacaa---taccttggggatgttga 4183094  T
Q  179 gggattgtttgcgcannnnnnnctaatagtgccagcttttcttatttttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtg 278  Q
    ||||||||||| |||       ||||||||| ||  |||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4183093 gggattgtttgtgcatttttt-ctaatagtgacaagttttttgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtg 4182995  T
Q  279 ttcctcaaataggagattgtggtttttattccttaaccaaggcattatatatatctgaagatgaccaagtgctgatgtatattctgaagatggggaaatt 378  Q
    |||||||||| ||||||  |  | | |||  |||||| ||  |||||||||| |||||  |||||||||||||||||||| || |||||| | |||||||    
T  4182994 ttcctcaaatgggagatgcttatatatatatcttaactaaaccattatatatttctgagcatgaccaagtgctgatgtattttatgaagaggaggaaatt 4182895  T
Q  379 tagtttggttgtctatggttccataaatga 408  Q
    |||||||| |||||||| ||||||||||||    
T  4182894 tagtttggctgtctatgattccataaatga 4182865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 79 - 408
Target Start/End: Complemental strand, 4744034 - 4743709
Alignment:
Q  79 attgtttctcttgctttggagaatgagttgtatcaagagctttctcaccctcattatgattaccaacctggaaatggcataattaccttgggggtgttga 178  Q
    ||||||||||||  |||| |||| ||||  ||||||||| |||||||||||| |||||||  |||| ||| || |  ||    |||||||||||||||||    
T  4744034 attgtttctcttcatttgcagaaggagtcttatcaagagttttctcaccctctttatgatatccaatctgaaacttacaa---taccttgggggtgttga 4743938  T
Q  179 gggattgtttgcgcannnnnnnctaatagtgccagcttttcttatttttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtg 278  Q
    ||||||||||| |||       ||||||||| ||  |||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4743937 gggattgtttgtgcatttttt-ctaatagtgacaagttttttgatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtg 4743839  T
Q  279 ttcctcaaataggagattgtggtttttattccttaaccaaggcattatatatatctgaagatgaccaagtgctgatgtatattctgaagatggggaaatt 378  Q
    |||||||||| ||||||  |  | | |||  |||||| ||  |||||||||| |||||  |||||||||||||||||||| || |||||| | |||||||    
T  4743838 ttcctcaaatgggagatgcttatatatatatcttaactaaaccattatatatttctgagcatgaccaagtgctgatgtattttatgaagaggaggaaatt 4743739  T
Q  379 tagtttggttgtctatggttccataaatga 408  Q
    |||||||| |||||||| ||||||||||||    
T  4743738 tagtttggctgtctatgattccataaatga 4743709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 747385 - 747352
Alignment:
Q  15 gggaatatttgtgagtgacactgttaattggttg 48  Q
    ||||||||||||||||||||||||||||||||||    
T  747385 gggaatatttgtgagtgacactgttaattggttg 747352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 9608602 - 9608570
Alignment:
Q  16 ggaatatttgtgagtgacactgttaattggttg 48  Q
    |||||||||||||||||||||||||||||||||    
T  9608602 ggaatatttgtgagtgacactgttaattggttg 9608570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 23197024 - 23197064
Alignment:
Q  233 atgaaggaatatggaaatggacaatcttggactaaattgtt 273  Q
    ||||||||||||||||||| | |||||||||||||||||||    
T  23197024 atgaaggaatatggaaatgaagaatcttggactaaattgtt 23197064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 7334515 - 7334484
Alignment:
Q  16 ggaatatttgtgagtgacactgttaattggtt 47  Q
    ||||||||||||||||||||||||||||||||    
T  7334515 ggaatatttgtgagtgacactgttaattggtt 7334484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 2492086 - 2492144
Alignment:
Q  225 tttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcct 283  Q
    ||||||| |||||||| ||||||||| || | ||||||||||||||||  |||||||||    
T  2492086 tttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcct 2492144  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 2631361 - 2631419
Alignment:
Q  225 tttggatcatgaaggaatatggaaatggacaatcttggactaaattgttaagtgttcct 283  Q
    ||||||| ||||||||||||||||||  | | ||||||||||||||||  |||||||||    
T  2631361 tttggattatgaaggaatatggaaatcaagagtcttggactaaattgtgcagtgttcct 2631419  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 20016233 - 20016184
Alignment:
Q  224 ttttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 273  Q
    ||||||||||||||||||||||||| |  | | |||||||||||||||||    
T  20016233 ttttggatcatgaaggaatatggaattcaagagtcttggactaaattgtt 20016184  T

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