View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_high_12 (Length: 478)
Name: NF3678_high_12
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_high_12 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 11 - 459
Target Start/End: Original strand, 46222808 - 46223256
Alignment:
| Q |
11 |
cagagagtgttaatactaactttgaggaatatgagagggagatggttggtgttggattgaagaagagtggaagtgtgaaggattatgtgatggattggat |
110 |
Q |
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| T |
46222808 |
cagagagtgttaatactagctttgaggaatatgagagggagatggttggtggtggattgaagaagagtggaagtgtgaaggattatgtgatggattggat |
46222907 |
T |
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| Q |
111 |
tggaaaagaggtgaaggaagaaagaacaaagaatgatgatttggtgggtggaagtggaaagggagagaaaagtaagatgaagaagaaattggagtggtgg |
210 |
Q |
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| T |
46222908 |
tggaaaagaggtgaaggaagaaagaacaaagaatgatgatttggtgggtggaagtggaaagggagagaaaagtaagatgaagaagaaattggagtggtgg |
46223007 |
T |
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| Q |
211 |
gaatcaatggatgaaggaaagagaaagggtgatttgaaaaaagagaagagaagaccagtaagagaatggtggaaggaggagtattctcaagagcttgaaa |
310 |
Q |
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| T |
46223008 |
gaatcaatggatgaaggaaagagaaagggtgatttgaaaaaagagaagagaagaccagtaagagaatggtggaaggaggagtattctcaagagcttgaaa |
46223107 |
T |
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| Q |
311 |
acaagaacaagaagaagaataataagaaaaagagtgnnnnnnntggtgataactggtggaaatgggagagagatcatgttcatgatcatgatgctggtag |
410 |
Q |
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| T |
46223108 |
acaagaacaagaagaagaataataagaaaaagagtgaaaaaaatggtgataattggtggaaatgggacagagatcatgttcatgatcatgatgctggtag |
46223207 |
T |
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| Q |
411 |
tgatgtgaagaaaatgagttataaaaaccgtagtaggaaggaacgaggt |
459 |
Q |
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| T |
46223208 |
tgatgtgaagaaaatgagttataaaaaccgtagtaggaaggaacgaggt |
46223256 |
T |
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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 115
Target Start/End: Complemental strand, 227119 - 227089
Alignment:
| Q |
85 |
gtgaaggattatgtgatggattggattggaa |
115 |
Q |
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| T |
227119 |
gtgaaggattatgtgatggattggattggaa |
227089 |
T |
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