View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3678_high_16 (Length: 428)

Name: NF3678_high_16
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3678_high_16
NF3678_high_16
[»] chr6 (4 HSPs)
chr6 (19-410)||(586910-587299)
chr6 (318-352)||(31434440-31434474)
chr6 (319-352)||(1008051-1008084)
chr6 (319-352)||(5258147-5258180)
[»] chr2 (1 HSPs)
chr2 (190-264)||(36872911-36872985)
[»] chr8 (1 HSPs)
chr8 (319-352)||(21121395-21121428)
[»] chr7 (1 HSPs)
chr7 (319-352)||(40630684-40630717)
[»] chr4 (2 HSPs)
chr4 (319-352)||(29399054-29399087)
chr4 (319-352)||(32633405-32633438)
[»] chr1 (5 HSPs)
chr1 (319-352)||(4001454-4001487)
chr1 (319-352)||(4318844-4318877)
chr1 (319-352)||(7133301-7133334)
chr1 (319-352)||(37311754-37311787)
chr1 (319-352)||(41165532-41165565)


Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 410
Target Start/End: Original strand, 586910 - 587299
Alignment:
Q  19 acacttatggtgattaaattatggtttcaaaccatatgttgttgtgaggtaataccatagtactccatttgatttatgagacatctcattatatagagtc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  586910 acacttatggtgattaaattatggtttcaaaccatatgttgttgtgaggtaataccatagtactccatttgatttatgagacatctcattatatagagtc 587009  T
Q  119 ctgaataaaagttagctttgaattgttttctctttattcattggtcgtacacaatctttttg--ttgtggttatcaagtggaggagaagatggatatgta 216  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  587010 ctgaataaaagttagctttcaattg-tttctctttattcattggtcttacacaatctttttgttttgtggttatcaagtggaggagaagatggatatgta 587108  T
Q  217 cgtttgcatcactttgatccagaatatttctttatcaaaatttagtgctcgagaatttctggtcaatataaattgtggttcctagaagttagatttaatt 316  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||   |||||||    
T  587109 cgtttgcatcactttgatccagaatatttctatatccaaatttagtgctcgagaatttctggtcaatataaattgtggtttctagaagtt---tttaatt 587205  T
Q  317 caaacaacaacaaccaagacttttcccactaagtggttgcttcatcatgaccgtctcatgacgaattgcaggctgaactatatgcggattggac 410  Q
    |||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||  |||||||    
T  587206 caaataacaacaaccaagactttttccactaagtggctgcttcatcatgaccgtctcatgacgaattgcagattgaactatatgccaattggac 587299  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 352
Target Start/End: Original strand, 31434440 - 31434474
Alignment:
Q  318 aaacaacaacaaccaagacttttcccactaagtgg 352  Q
    ||||||||||||||||||||| |||||||||||||    
T  31434440 aaacaacaacaaccaagacttatcccactaagtgg 31434474  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 1008051 - 1008084
Alignment:
Q  319 aacaacaacaaccaagacttttcccactaagtgg 352  Q
    |||||||||||||||| |||||||||||||||||    
T  1008051 aacaacaacaaccaagccttttcccactaagtgg 1008084  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 5258147 - 5258180
Alignment:
Q  319 aacaacaacaaccaagacttttcccactaagtgg 352  Q
    |||||||||||||||||||| |||||||||||||    
T  5258147 aacaacaacaaccaagacttatcccactaagtgg 5258180  T

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Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 190 - 264
Target Start/End: Original strand, 36872911 - 36872985
Alignment:
Q  190 tcaagtggaggagaagatggatatgtacgtttgcatcactttgatccagaatatttctttatcaaaatttagtgc 264  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||  ||||||||||||||||    
T  36872911 tcaagtggaggagaagatggatatgtacgtttgcatcactttgacccagattatttcaatatcaaaatttagtgc 36872985  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 352
Target Start/End: Complemental strand, 21121428 - 21121395
Alignment:
Q  319 aacaacaacaaccaagacttttcccactaagtgg 352  Q
    |||||||||||||||| |||||||||||||||||    
T  21121428 aacaacaacaaccaagccttttcccactaagtgg 21121395  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 352
Target Start/End: Complemental strand, 40630717 - 40630684
Alignment:
Q  319 aacaacaacaaccaagacttttcccactaagtgg 352  Q
    |||||||||||||||| |||||||||||||||||    
T  40630717 aacaacaacaaccaagccttttcccactaagtgg 40630684  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 352
Target Start/End: Complemental strand, 29399087 - 29399054
Alignment:
Q  319 aacaacaacaaccaagacttttcccactaagtgg 352  Q
    |||||||||||||||| |||||||||||||||||    
T  29399087 aacaacaacaaccaagccttttcccactaagtgg 29399054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 32633405 - 32633438
Alignment:
Q  319 aacaacaacaaccaagacttttcccactaagtgg 352  Q
    |||||||||||||||| |||||||||||||||||    
T  32633405 aacaacaacaaccaagccttttcccactaagtgg 32633438  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 4001454 - 4001487
Alignment:
Q  319 aacaacaacaaccaagacttttcccactaagtgg 352  Q
    |||||||||||||||| |||||||||||||||||    
T  4001454 aacaacaacaaccaagccttttcccactaagtgg 4001487  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 4318844 - 4318877
Alignment:
Q  319 aacaacaacaaccaagacttttcccactaagtgg 352  Q
    |||||||||||||||| |||||||||||||||||    
T  4318844 aacaacaacaaccaagccttttcccactaagtgg 4318877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 7133301 - 7133334
Alignment:
Q  319 aacaacaacaaccaagacttttcccactaagtgg 352  Q
    |||||||||||||||| |||||||||||||||||    
T  7133301 aacaacaacaaccaagccttttcccactaagtgg 7133334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 37311754 - 37311787
Alignment:
Q  319 aacaacaacaaccaagacttttcccactaagtgg 352  Q
    |||||||||||||||| |||||||||||||||||    
T  37311754 aacaacaacaaccaagccttttcccactaagtgg 37311787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 352
Target Start/End: Complemental strand, 41165565 - 41165532
Alignment:
Q  319 aacaacaacaaccaagacttttcccactaagtgg 352  Q
    |||||||||||||||| |||||||||||||||||    
T  41165565 aacaacaacaaccaagccttttcccactaagtgg 41165532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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