View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_high_17 (Length: 416)
Name: NF3678_high_17
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Complemental strand, 27004438 - 27004050
Alignment:
| Q |
18 |
atcatcctctgcttaatttagtaacactggatttcttttggtattagattcgagggttggcatggccttgtttacttgttgggtcgatcgcccaaagtgc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27004438 |
atcatcctctgcttaatttagtaacactggatttcttttggtattagattcgagggttggcatggccttgtttacttgttgggtcgatcgcccaaagtgc |
27004339 |
T |
|
| Q |
118 |
aaggtgcaaacatactatttatttctctcgtgtttctttctaaaacaagttgttgcaatttacgaaactttgttaaatctgagcgtctgttctccatatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27004338 |
aaggtgcaaacatactatttatttctctcgtgtttctttctaaaacaagttgttgcaatttacgaaactttgttaaatctgagcgtctgttctccatatt |
27004239 |
T |
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| Q |
218 |
ctattttagtgataaagtttgtcttaatagttccttagaaacttttggctaaagttctgcttgctatgaatgactatttcagatagcaaggctccttttg |
317 |
Q |
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| T |
27004238 |
ctattttagtgataaagtttgtcttaatagttgcttagaaacttttggctaaaattctgcttactatgaatgactatttcagatagcaaggctccttttg |
27004139 |
T |
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| Q |
318 |
tccctcaattgtaataccattttctctatgttgatgatttctcatctgcttcttatatttaaatgaaaatgtgaattatcctctctctg |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27004138 |
tccctcaattgtaataccattttctctatgttgatgatttctcatttgcttcttatatttaaatgaaaatgtgaattatcctctctctg |
27004050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 26989882 - 26989476
Alignment:
| Q |
18 |
atcatcctctgcttaatttagtaacactggatttcttttggtattagattcgagggttggcatggccttgtttacttgttgggtcgatcgcccaaagtgc |
117 |
Q |
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||||||||| |||| ||||||||| |||| ||||||| |||| |||||||||||||||||||||||||||||||||| |||| ||||| || |||||||| |
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| T |
26989882 |
atcatcctccgcttgatttagtaatactgaatttcttatggtgttagattcgagggttggcatggccttgtttacttattggatcgattgctcaaagtgc |
26989783 |
T |
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| Q |
118 |
aaggtgcaaacatactatttatttctctcgtgtttctttctaaaacaagttgttgcaatttacgaaactt--tgttaaatctgagcgtctgttctccata |
215 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||| | |||||| ||| |||| |||| |||||| | |||| |
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| T |
26989782 |
aaggtgcaaacatactatctatt--tctcgtgtttctttctaaaatgagttgttgcaatttgcaaaactttatgtcaaatatgagaatctgtttttcata |
26989685 |
T |
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| Q |
216 |
ttct----------------attttagtgataaagtttgtcttaatagttccttagaaacttttggctaaagttctgcttgctatgaatgactatt-tca |
298 |
Q |
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|||| | ||| |||||||||||||||||||||||| ||| |||||||||||||||| ||| || | |||||| ||| || ||| |
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| T |
26989684 |
ttctttttttgtttatgttcaatttggtgataaagtttgtcttaatagttgctt-gaaacttttggctaaaattcccctctccatgaataacttttctca |
26989586 |
T |
|
| Q |
299 |
gatagcaaggctccttttgtccctcaattgtaataccattttctctatgttgatgatttctcatctgcttcttatatttaaatgaaaatgtgaattatcc |
398 |
Q |
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|||||||||| |||||||||| |||||| || |||| || |||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
26989585 |
gatagcaaggttccttttgtcactcaatagt-atactgcttgctctgcgttgatgatttctcatttgcatcttatatttaaatgaaaatgtgaattatcc |
26989487 |
T |
|
| Q |
399 |
tctctctgctc |
409 |
Q |
| |
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||||||||||| |
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| T |
26989486 |
tctctctgctc |
26989476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 48 - 137
Target Start/End: Original strand, 26977788 - 26977877
Alignment:
| Q |
48 |
atttcttttggtattagattcgagggttggcatggccttgtttacttgttgggtcgatcgcccaaagtgcaaggtgcaaacatactattt |
137 |
Q |
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|||||||||||| |||||||||||| ||||||||||||| |||||||||||| | | | || || ||||||||||||||| ||||||||| |
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| T |
26977788 |
atttcttttggtgttagattcgaggattggcatggccttctttacttgttggattggttgctcagagtgcaaggtgcaaatatactattt |
26977877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 26944837 - 26944758
Alignment:
| Q |
61 |
ttagattcgagggttggcatggccttgtttacttgttgggtcgatcgcccaaagtgcaaggtgcaaacatactatttatt |
140 |
Q |
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|||||||||||| ||||| |||||| |||||||||||| | | |||| || ||||||||||||||| ||||||||||| |
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| T |
26944837 |
ttagattcgaggattggcgtggcctgctttacttgttggatgggtcgcacagagtgcaaggtgcaaatttactatttatt |
26944758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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