View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_high_23 (Length: 361)
Name: NF3678_high_23
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 9 - 351
Target Start/End: Original strand, 13842564 - 13842906
Alignment:
| Q |
9 |
tttatggataaatattattggatttggatatatatgggtcttcattttttcttttcgttgtggacgaaataaaagataacaagtttttgattttaaatgg |
108 |
Q |
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| T |
13842564 |
tttatggataaatattattggatttggatatatatgggtcttcattttttcttttcgttgtggacgaaataaaagataacaagtttttgattttaaatgg |
13842663 |
T |
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| Q |
109 |
gtgtttggttcgacaaggtcgatggttgtgaaaatgagttcccagtgttctatgtatgagtggttttgaggtttgttattctatgtatgagctttttggc |
208 |
Q |
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| T |
13842664 |
gtgtttggttcgacaaggtcgatggttgtgaaaatgagttcccagtgttctatgtatgagtggttttgaggtttgttattctatgtatgagctttttggc |
13842763 |
T |
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| Q |
209 |
tccttcatcattgaaggagagtagtaaactaccatttacaatcatacaaaccttttatctttgatgtcctatgaatgagaaaaaattataacctaannnn |
308 |
Q |
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| T |
13842764 |
tccttcatcattgaaggagagtagtaaactaccatttacaatcatacaaaccttttatctttgatgtcctatgaatgagaaaaaattataacctaatttt |
13842863 |
T |
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| Q |
309 |
nnnncttaataatctcggtaacaaatatggtgtaacacctatg |
351 |
Q |
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| T |
13842864 |
ttttcttaataatctccataacaaatatggtgtaacacctatg |
13842906 |
T |
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