View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_high_24 (Length: 350)
Name: NF3678_high_24
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 11 - 332
Target Start/End: Original strand, 29048521 - 29048842
Alignment:
| Q |
11 |
cacagaatcaatcaatctctcaagttttgaaattcttcatcggtattatctctcaattctcactcaattcatttttgtatcaatctttattatcatcatc |
110 |
Q |
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| T |
29048521 |
cacagaatcaatcaatctctcaagttttgaaattcttcaccggtattatctctcaattctcactcaattcatttttgtatcaatctttattatcatcatc |
29048620 |
T |
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| Q |
111 |
attacagtaaaagcacttaaggtgtttgtaacattgccaagtagaacaaaaccaagaatgttgatttatgtattgtaacctttgcatcattacattgcat |
210 |
Q |
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| T |
29048621 |
gtcacggtaaaagcacttaaggtgtttgtaacattgccaagtagaacaaaaccaagaatgttgatttatgtattgtaacctttgcatcattacattgcat |
29048720 |
T |
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| Q |
211 |
aaaccatatccttcaattcaaccatggccacactacttaatacagtttctccagtttcaaatttacctgtaatatcaaaaagaaacggttacagtttctt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29048721 |
aaaccatatccttcaattcaaccatggccacactacttaatacagtttctccagtttcaaatttacatgtaatatcaaaaagaaacggttacagtttctt |
29048820 |
T |
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| Q |
311 |
atataaccatgttcctaatttt |
332 |
Q |
| |
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|||||| ||||||||||||||| |
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| T |
29048821 |
atataatcatgttcctaatttt |
29048842 |
T |
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