View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_high_25 (Length: 340)
Name: NF3678_high_25
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 38029728 - 38030051
Alignment:
| Q |
1 |
atcaagattgaaagtctgttcacttatcagaattaaatgctacaaagctcaagctttttggtaagaacaaacctctgaaaggacttatcccaatacataa |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38029728 |
atcaagattgaaagtccgttcacttatcagaattaaatgctacaaagctcaagctttttggtaagaaaaaacctctgaaaggacttatcccaatacataa |
38029827 |
T |
|
| Q |
101 |
actgatactacctcatcaattatgaagaagatttaacaaataccaagttagttggagcactgccttttcaatacagtaaagtttgcaagaatacaaagta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38029828 |
actgatactacctcatcaattatgaagaagatttaacaaataccaagttagttggagcactgccttttcaatgcagtaaagtttgcaagaatacaaagta |
38029927 |
T |
|
| Q |
201 |
tgacccattttaaatcctgctagttccgtggaagagtgaaaacacaaaacacgatgaaattcaatcattttgcaggagtctatccatatgaagacaagac |
300 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38029928 |
tgacacattttaaatcctgctagttctgtggaagagtgaaaacacaaaacacgatgaaattcaatcattttgcaggagtctatccatatgaagacgagac |
38030027 |
T |
|
| Q |
301 |
ttgcaacaacttccaagtatattt |
324 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
38030028 |
ttgcaacaacttccaagtatattt |
38030051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 111 - 256
Target Start/End: Complemental strand, 50907625 - 50907480
Alignment:
| Q |
111 |
cctcatcaattatgaagaagatttaacaaataccaagttagttggagcactgccttttcaatacagtaaagtttgcaagaatacaaagtatgacccattt |
210 |
Q |
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||||||||||| ||||||||||||||||| ||||||||| ||||| ||||||||| |||| |||||||| |||||||||||||| |||| | | || |
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| T |
50907625 |
cctcatcaattttgaagaagatttaacaacaaccaagttaattggaacactgccttgacaatgcagtaaagcttgcaagaatacaagctatgtcataatt |
50907526 |
T |
|
| Q |
211 |
taaatcctgctagttccgtggaagagtgaaaacacaaaacacgatg |
256 |
Q |
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||||||| |||||||| |||||||||||||||| | ||||| |||| |
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| T |
50907525 |
taaatccagctagttctgtggaagagtgaaaactcgaaacatgatg |
50907480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 111 - 252
Target Start/End: Original strand, 38041264 - 38041407
Alignment:
| Q |
111 |
cctcatcaattatgaagaagatttaacaaa-taccaagttagttggagcact-gccttttcaatacagtaaagtttgcaagaatacaaagtatgacccat |
208 |
Q |
| |
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|||||| ||||||||| ||||| |||| || ||||||| ||||||| ||| | |||||||| |||| |||||||||||||||||||||||||| ||| |
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| T |
38041264 |
cctcatgaattatgaataagatgtaactaactaccaagctagttgggacacccggcttttcaacgcagtgaagtttgcaagaatacaaagtatgacacat |
38041363 |
T |
|
| Q |
209 |
tttaaatcctgctagttccgtggaagagtgaaaacacaaaacac |
252 |
Q |
| |
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||||||| ||||||| ||||||||||||||||||||| |||||| |
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|
| T |
38041364 |
tttaaattctgctagatccgtggaagagtgaaaacacgaaacac |
38041407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 38041148 - 38041237
Alignment:
| Q |
21 |
cacttatcagaattaaatgctacaaagctcaagctttttggtaagaacaaacctctgaaaggacttatcccaatacataaactgatactac |
111 |
Q |
| |
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|||||||||||||||||| |||||| ||||| ||||| |||||| |||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
38041148 |
cacttatcagaattaaatactacaa-gctcacgctttatggtaacaacaaacctctgaagcgacttatcccaatacaaaaactgatactac |
38041237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 38034653 - 38034746
Alignment:
| Q |
127 |
gaagatttaacaaataccaagttagttggagcactgccttttcaatacagtaaagtttgcaagaatacaaagtatgacccattttaaatcctgc |
220 |
Q |
| |
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|||||| ||| || |||||||||| ||| | ||||||||||||||| ||| |||| ||||||||||||||||||| | |||||||||| |||| |
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| T |
38034653 |
gaagatctaagaactaccaagttaattgaaacactgccttttcaatgcaggaaagcctgcaagaatacaaagtatggcacattttaaatactgc |
38034746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 50907720 - 50907668
Alignment:
| Q |
26 |
atcagaattaaatgctacaaagctcaagctttttggtaagaacaaacctctgaa |
79 |
Q |
| |
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||||||||||||||||| ||||||||| |||||||||| |||||| ||||||| |
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|
| T |
50907720 |
atcagaattaaatgcta-taagctcaagttttttggtaacaacaaatctctgaa |
50907668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 2 - 324
Target Start/End: Original strand, 21605720 - 21606042
Alignment:
| Q |
2 |
tcaagattgaaagtctgttcacttatcagaattaaatgctacaaagctcaagctttttggtaagaacaaacctctgaaaggacttatcccaatacataaa |
101 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21605720 |
tcaagattgaaagtccgttcacttatcagaattaaatgctacaaagctcaagctttttggtaagaacaaacctctgaaaggacttatcccaatacagaaa |
21605819 |
T |
|
| Q |
102 |
ctgatactacctcatcaattatgaagaagatttaacaaataccaagttagttggagcactgccttttcaatacagtaaagtttgcaagaatacaaagtat |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
21605820 |
ctgatactacctcatcaattatgaagaagatttaacaaataccaagttagttggagcactgccttttcaatgcagtaaagtttgcaagaatacaaagtat |
21605919 |
T |
|
| Q |
202 |
gacccattttaaatcctgctagttccgtggaagagtgaaaacacaaaacacgatgaaattcaatcattttgcaggagtctatccatatgaagacaagact |
301 |
Q |
| |
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||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21605920 |
gacacattttaaatcctgctagttctgtggaagagtgaaaacacaaaacacgatgaaattcaatcattttgcaggagtctatccatatgaagactagact |
21606019 |
T |
|
| Q |
302 |
tgcaacaacttccaagtatattt |
324 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
21606020 |
tgcaacaacttccaagtatattt |
21606042 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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