View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_high_26 (Length: 338)
Name: NF3678_high_26
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 310
Target Start/End: Complemental strand, 43133009 - 43132714
Alignment:
| Q |
19 |
gaattcatcttcatttaagaatatgttaccgtaactcgatggcggcgattctggatcttcagatttttgcagtctttgtgggatataatcctgtaaatat |
118 |
Q |
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| T |
43133009 |
gaattcatcttcatttaagaatatgttatcgtaactcgatggcggcgattctggatcttcagatttttgcagtctttgtgggatataatcctgtaaatat |
43132910 |
T |
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| Q |
119 |
ggttaaaactgctattagtgaaattgtgaaggaca----tagaaaattctcaatcctagccaaagcaggggaatttattttaaatgtttttagttagtat |
214 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43132909 |
ggttaaaactgctattagtgaaattgtgaaggacatagatagaaaattctcaatcctagccaaagcaggggaatttattttaaatgtttttagttagtat |
43132810 |
T |
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| Q |
215 |
tatagannnnnnnngcaggaatatctacaagtatttgactatttgtgcaaccatggtacactatctacacaaattaatggatttagtactcctttg |
310 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
43132809 |
tatagaatttttttgcaggaatatctacaagtatttgactatttgtgcaaccatggtacactatctacacagagtaatggatttagtactcctttg |
43132714 |
T |
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