View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3678_high_3 (Length: 620)

Name: NF3678_high_3
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3678_high_3
NF3678_high_3
[»] chr7 (24 HSPs)
chr7 (18-483)||(40190254-40190720)
chr7 (498-584)||(39276617-39276703)
chr7 (498-584)||(39651145-39651231)
chr7 (498-584)||(11840444-11840530)
chr7 (498-584)||(21600967-21601053)
chr7 (498-584)||(21670789-21670875)
chr7 (498-564)||(29467755-29467821)
chr7 (493-584)||(29684110-29684201)
chr7 (498-568)||(17169028-17169098)
chr7 (516-584)||(688085-688153)
chr7 (520-584)||(9143502-9143566)
chr7 (516-584)||(49146119-49146187)
chr7 (498-564)||(3791483-3791549)
chr7 (498-584)||(27737738-27737824)
chr7 (498-568)||(48529946-48530016)
chr7 (510-564)||(35157012-35157066)
chr7 (510-564)||(44804536-44804590)
chr7 (510-584)||(34872185-34872259)
chr7 (516-584)||(4848370-4848439)
chr7 (516-564)||(24684650-24684698)
chr7 (516-568)||(31899998-31900050)
chr7 (331-366)||(38744418-38744453)
chr7 (525-564)||(42684816-42684855)
chr7 (528-564)||(47175507-47175543)
[»] chr8 (25 HSPs)
chr8 (22-365)||(42899975-42900315)
chr8 (498-584)||(18378799-18378885)
chr8 (510-584)||(36776420-36776494)
chr8 (515-584)||(41972977-41973046)
chr8 (510-584)||(24053930-24054004)
chr8 (482-584)||(7389185-7389288)
chr8 (510-584)||(25346050-25346124)
chr8 (517-584)||(25620711-25620778)
chr8 (517-584)||(40616091-40616158)
chr8 (510-564)||(40587709-40587763)
chr8 (510-584)||(41534245-41534319)
chr8 (516-584)||(4466417-4466485)
chr8 (516-564)||(8760723-8760771)
chr8 (516-564)||(25836282-25836330)
chr8 (498-567)||(41152672-41152743)
chr8 (510-584)||(9472168-9472241)
chr8 (510-584)||(42245729-42245803)
chr8 (516-584)||(25616494-25616563)
chr8 (516-564)||(1942811-1942859)
chr8 (516-564)||(8162792-8162840)
chr8 (517-584)||(44389002-44389069)
chr8 (517-564)||(45435013-45435060)
chr8 (516-564)||(32844171-32844219)
chr8 (498-574)||(19243239-19243315)
chr8 (498-574)||(19316423-19316499)
[»] chr4 (33 HSPs)
chr4 (498-584)||(3821195-3821281)
chr4 (480-568)||(52799011-52799099)
chr4 (498-584)||(39716714-39716800)
chr4 (516-584)||(5752473-5752541)
chr4 (498-584)||(15704115-15704201)
chr4 (498-584)||(35498529-35498615)
chr4 (498-564)||(29712373-29712440)
chr4 (509-584)||(30529275-30529350)
chr4 (510-584)||(13171641-13171715)
chr4 (498-564)||(35716315-35716381)
chr4 (483-584)||(46104167-46104269)
chr4 (510-584)||(50119954-50120028)
chr4 (510-564)||(51347504-51347558)
chr4 (498-564)||(53991568-53991634)
chr4 (516-584)||(12682752-12682820)
chr4 (498-561)||(24948306-24948369)
chr4 (510-584)||(3757742-3757816)
chr4 (510-584)||(17730449-17730523)
chr4 (510-564)||(24547347-24547401)
chr4 (498-564)||(39406248-39406314)
chr4 (510-564)||(20588578-20588632)
chr4 (510-584)||(36743198-36743272)
chr4 (498-548)||(47560251-47560301)
chr4 (516-564)||(8956938-8956986)
chr4 (516-564)||(8986910-8986958)
chr4 (516-564)||(37349808-37349856)
chr4 (504-564)||(578621-578681)
chr4 (516-584)||(2116111-2116179)
chr4 (516-564)||(9888906-9888954)
chr4 (517-584)||(16896008-16896075)
chr4 (516-564)||(35833430-35833478)
chr4 (510-564)||(43021908-43021962)
chr4 (516-564)||(50033703-50033750)
[»] chr6 (14 HSPs)
chr6 (481-564)||(4897511-4897593)
chr6 (498-584)||(15045543-15045629)
chr6 (516-584)||(6969292-6969360)
chr6 (498-568)||(1218522-1218592)
chr6 (498-568)||(24443931-24444001)
chr6 (516-584)||(4107976-4108044)
chr6 (504-584)||(9981256-9981336)
chr6 (498-568)||(18323839-18323909)
chr6 (524-584)||(28573825-28573885)
chr6 (510-560)||(9737773-9737823)
chr6 (517-584)||(33328274-33328341)
chr6 (529-582)||(25529276-25529329)
chr6 (517-584)||(35133197-35133263)
chr6 (500-574)||(34316957-34317031)
[»] scaffold0009 (2 HSPs)
scaffold0009 (498-584)||(225439-225525)
scaffold0009 (510-564)||(108563-108617)
[»] chr5 (17 HSPs)
chr5 (498-584)||(3088028-3088114)
chr5 (498-584)||(25698714-25698800)
chr5 (498-584)||(30140506-30140592)
chr5 (498-584)||(33709810-33709896)
chr5 (498-568)||(41689279-41689349)
chr5 (510-584)||(30754425-30754499)
chr5 (510-564)||(36886985-36887039)
chr5 (498-564)||(12592485-12592551)
chr5 (516-564)||(6305466-6305514)
chr5 (516-564)||(43138563-43138611)
chr5 (517-580)||(12422345-12422408)
chr5 (498-553)||(26602196-26602251)
chr5 (510-564)||(17643402-17643456)
chr5 (516-564)||(754461-754509)
chr5 (498-568)||(34715607-34715670)
chr5 (498-564)||(42977849-42977912)
chr5 (516-584)||(34727331-34727400)
[»] chr2 (14 HSPs)
chr2 (498-584)||(28607225-28607311)
chr2 (498-584)||(10050186-10050272)
chr2 (498-564)||(17836971-17837037)
chr2 (498-568)||(2952761-2952831)
chr2 (498-568)||(9545788-9545858)
chr2 (498-584)||(24520870-24520956)
chr2 (498-564)||(32677200-32677266)
chr2 (498-564)||(9920926-9920992)
chr2 (498-584)||(18096495-18096581)
chr2 (510-584)||(19486205-19486279)
chr2 (498-568)||(4292795-4292865)
chr2 (510-584)||(10876568-10876640)
chr2 (500-584)||(19486108-19486192)
chr2 (510-564)||(42781027-42781081)
[»] chr1 (24 HSPs)
chr1 (498-584)||(16300393-16300479)
chr1 (498-564)||(33075673-33075739)
chr1 (498-584)||(52306073-52306159)
chr1 (498-581)||(47134708-47134791)
chr1 (498-568)||(1367295-1367365)
chr1 (498-564)||(22198924-22198990)
chr1 (498-568)||(4890102-4890172)
chr1 (498-568)||(17364616-17364686)
chr1 (498-568)||(29188313-29188383)
chr1 (498-564)||(29844898-29844964)
chr1 (498-568)||(33359704-33359774)
chr1 (510-584)||(46626321-46626395)
chr1 (498-564)||(1826797-1826863)
chr1 (516-584)||(5426238-5426306)
chr1 (510-584)||(19322341-19322415)
chr1 (501-564)||(10766193-10766256)
chr1 (498-560)||(42678378-42678440)
chr1 (515-564)||(38894776-38894825)
chr1 (516-564)||(28570747-28570795)
chr1 (517-584)||(19400754-19400821)
chr1 (517-584)||(50557850-50557916)
chr1 (510-568)||(10698131-10698189)
chr1 (517-584)||(51971269-51971335)
chr1 (498-564)||(43116052-43116118)
[»] scaffold0385 (1 HSPs)
scaffold0385 (482-564)||(8317-8397)
[»] scaffold0057 (1 HSPs)
scaffold0057 (498-568)||(20592-20662)
[»] chr3 (22 HSPs)
chr3 (516-584)||(18682511-18682579)
chr3 (498-564)||(11955542-11955608)
chr3 (498-584)||(22519194-22519279)
chr3 (516-584)||(8393585-8393653)
chr3 (509-584)||(19368938-19369013)
chr3 (498-564)||(22473648-22473714)
chr3 (510-584)||(29530558-29530632)
chr3 (519-584)||(26777847-26777912)
chr3 (498-584)||(19895642-19895728)
chr3 (510-564)||(35855220-35855274)
chr3 (510-584)||(55297340-55297414)
chr3 (517-582)||(28981816-28981881)
chr3 (516-584)||(4139344-4139412)
chr3 (516-584)||(53800521-53800589)
chr3 (510-564)||(8528120-8528174)
chr3 (517-584)||(40831923-40831990)
chr3 (510-564)||(26102167-26102221)
chr3 (498-568)||(33872209-33872279)
chr3 (517-558)||(11602187-11602228)
chr3 (498-568)||(9563230-9563300)
chr3 (525-574)||(2847341-2847390)
chr3 (527-564)||(15321260-15321297)
[»] scaffold0759 (1 HSPs)
scaffold0759 (516-584)||(5888-5956)
[»] scaffold0051 (1 HSPs)
scaffold0051 (516-584)||(62084-62152)
[»] scaffold0069 (1 HSPs)
scaffold0069 (498-567)||(11777-11846)
[»] scaffold0381 (1 HSPs)
scaffold0381 (516-564)||(9591-9639)


Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 483
Target Start/End: Complemental strand, 40190720 - 40190254
Alignment:
Q  18 ggtacctagtctagactaaaactatataacttgcgtatctattatgagttatgaatcaacagactaaaatttggtgttgtagactggttttctggaaatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40190720 ggtacctagtctagactaaaactatataacttgcgtatctattatgaattatgaatcaacagactaaaatttggtgttggagactggttttctggaaatc 40190621  T
Q  118 gattcgattcgattcaacaaatcatattatatattgaatcaaaactaacagtacagactaagtaagatttaataatcaaagtaaaattatgtgaaaccct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40190620 gattcgattcgattcaacaaatcatattatatattgaatcaaaactaacagtacagactaagtaagatttaataatcaaagtaaaattatgtgaaaccct 40190521  T
Q  218 caccgatcaatagatcatgcatgattccactgctataataataataagaaaatagaaacaagagaattttgagagataataactcactaaccgcagaaat 317  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40190520 caccaatcaatagatcatgcatgattccactgctataataataataagaaaatagaaacaagagaattttgagagataataactcactaaccgcagaaat 40190421  T
Q  318 tgtgcaagaagattgggttgaattgaacgctgaaagaatcgagattcggnnnnnnnngaaggagaactcgccgaagagaatgatgttgcagcggcacatc 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||    
T  40190420 tgtgcaagaagattgggttgaattgaacgctgaaagaatcgagattcgg-aaaaaaagaaggagaactcgccgaagagaatgatgttgcagcggcacatc 40190322  T
Q  418 aatatattttaattgaattaatca--nnnnnnnnctaactttataaagtttttaaatcactttattat 483  Q
    ||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||    
T  40190321 aatatattttaattgaattaatcattttttttttctaactttataaagtttttaaatcactttattat 40190254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 498 - 584
Target Start/End: Original strand, 39276617 - 39276703
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||    
T  39276617 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaagggtaatttggtaaattacaaatttgttgagttt 39276703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 498 - 584
Target Start/End: Complemental strand, 39651231 - 39651145
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  39651231 tatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattactaattggttgagttt 39651145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 498 - 584
Target Start/End: Complemental strand, 11840530 - 11840444
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  11840530 tatacttctattaaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattattaattggttgagttt 11840444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 498 - 584
Target Start/End: Complemental strand, 21601053 - 21600967
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  21601053 tatacttctattaaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattattaattggttgagttt 21600967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 498 - 584
Target Start/End: Complemental strand, 21670875 - 21670789
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||  |||||||||||||||||||| |||||||||    
T  21670875 tatacttatattaaaagaaatgtcccttgaatttactattttgcccctataaaggataatttggtaaattacaaatttgttgagttt 21670789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 498 - 564
Target Start/End: Original strand, 29467755 - 29467821
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29467755 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 29467821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 493 - 584
Target Start/End: Complemental strand, 29684201 - 29684110
Alignment:
Q  493 tatactatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||| ||||| |||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||  ||| ||||||||||||||    
T  29684201 tataccatactaatataaaaagaaatgtgccttgaatttaccattttacccctataaggggcaatttggtaatctactaattggttgagttt 29684110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 498 - 568
Target Start/End: Original strand, 17169028 - 17169098
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaatta 568  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||    
T  17169028 tatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaaatta 17169098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 516 - 584
Target Start/End: Original strand, 688085 - 688153
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  688085 aatgtcctttgaatttaccattttgcccctataaggggcaatttggtaaattacaaaattgttgagttt 688153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 520 - 584
Target Start/End: Original strand, 9143502 - 9143566
Alignment:
Q  520 tcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  9143502 tcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaatttgttgagttt 9143566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 516 - 584
Target Start/End: Complemental strand, 49146187 - 49146119
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  49146187 aatgtccattgattttaccattttgcccctatgaggggcaatttggtaaattacaaattggttgagttt 49146119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 498 - 564
Target Start/End: Original strand, 3791483 - 3791549
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||    
T  3791483 tatacttatattaaaagaaatgtcctatggatttaccattttgcccctataaggggcaatttggtaa 3791549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 498 - 584
Target Start/End: Complemental strand, 27737824 - 27737738
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||| ||| |||||||| ||||||||||||||||||||| ||||||||| ||  ||||||||||||||| ||||||||||||||    
T  27737824 tatacttctataaaaagaaaagtcccttgaatttaccattttacccctataaaggataatttggtaaattactaattggttgagttt 27737738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 498 - 568
Target Start/End: Complemental strand, 48530016 - 48529946
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaatta 568  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||  |||||||||||||||||||    
T  48530016 tatacttatattaaaagaaatgtcctttgaaattaccattttgcccctattgggggcaatttggtaaatta 48529946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 510 - 564
Target Start/End: Complemental strand, 35157066 - 35157012
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35157066 aaaagaaatgtcacttgaatttaccattttgcccctataaggggcaatttggtaa 35157012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 510 - 564
Target Start/End: Original strand, 44804536 - 44804590
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44804536 aaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaa 44804590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 510 - 584
Target Start/End: Original strand, 34872185 - 34872259
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||  |||  |||||||||||||    
T  34872185 aaaagaaatgtcctttgaacttaccattttgtccctataaggggcaatttggtaatctacttattggttgagttt 34872259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 516 - 584
Target Start/End: Original strand, 4848370 - 4848439
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattac-aaattggttgagttt 584  Q
    ||||||| |||| ||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||    
T  4848370 aatgtccattgattttaccattttgcccctatgaggggtaatttggtaaattacaaaattggttgagttt 4848439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 516 - 564
Target Start/End: Complemental strand, 24684698 - 24684650
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||    
T  24684698 aatgtcccatgaatttaccattttgcctctataaggggcaatttggtaa 24684650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 516 - 568
Target Start/End: Complemental strand, 31900050 - 31899998
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaatta 568  Q
    ||||||| |||||||||| ||||||||||||| ||||||||||||||| ||||    
T  31900050 aatgtcctttgaatttacaattttgcccctattaggggcaatttggtagatta 31899998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 331 - 366
Target Start/End: Complemental strand, 38744453 - 38744418
Alignment:
Q  331 tgggttgaattgaacgctgaaagaatcgagattcgg 366  Q
    ||||||||||||||||||||||||||||||||||||    
T  38744453 tgggttgaattgaacgctgaaagaatcgagattcgg 38744418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 525 - 564
Target Start/End: Original strand, 42684816 - 42684855
Alignment:
Q  525 tgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  42684816 tgaatttaccattttgcccctataaggggcattttagtaa 42684855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 564
Target Start/End: Complemental strand, 47175543 - 47175507
Alignment:
Q  528 atttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||| |||||||||||| |||||||||||||||||    
T  47175543 atttacaattttgcccctagaaggggcaatttggtaa 47175507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 365
Target Start/End: Complemental strand, 42900315 - 42899975
Alignment:
Q  22 cctagtctagactaaaactatataacttgcgtatctat--------tatgagttatgaatcaacagactaaaatttggtgttgtagactggttttctgga 113  Q
    ||||||||||||||||||||||||||||||||||||||        ||||| |||||||||||||||||||||||||||| || ||| |||||||||  |    
T  42900315 cctagtctagactaaaactatataacttgcgtatctatattgatattatgaattatgaatcaacagactaaaatttggtgatggagattggttttctaaa 42900216  T
Q  114 aatcgattcgattcgattcaacaaatcatattatatattgaatcaaaactaacagtacagactaagtaagatttaataatcaaagtaaaattatgtgaaa 213  Q
    ||      ||||| |||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||   ||||||||||||||||||||||||    
T  42900215 aa-----ccgattggattcaacaaatcatattatatattgaatcaaaactgacattacaaactaagtaagatt---taatcaaagtaaaattatgtgaaa 42900124  T
Q  214 ccctcaccgatcaatagatcatgcatgattccactgctataataataataagaaaatagaaacaagagaattttgagagataataactcactaaccgcag 313  Q
    |||||||| ||||||| |||||||||||||||||||||   ||||||||| |||||| |||| || |||| ||||||||||||||||||||||||| |||    
T  42900123 ccctcaccaatcaataaatcatgcatgattccactgct---ataataatatgaaaattgaaataaaagaaatttgagagataataactcactaaccacag 42900027  T
Q  314 aaattgtgcaagaagattgggttgaattgaacgctgaaagaatcgagattcg 365  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42900026 aaattgtgcaagaagattgggttgaattgaacgctgaaagaatcaagattcg 42899975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 498 - 584
Target Start/End: Complemental strand, 18378885 - 18378799
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||| |||| ||||||||||||||||||||   |||||||||||||    
T  18378885 tatacttatattaaaagaaatgtcctttgaatttatcattttgcctctattaggggcaatttggtaaattaattattggttgagttt 18378799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 510 - 584
Target Start/End: Original strand, 36776420 - 36776494
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  |||||||||||||    
T  36776420 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgagttt 36776494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 515 - 584
Target Start/End: Original strand, 41972977 - 41973046
Alignment:
Q  515 aaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||    
T  41972977 aaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctactaattggttgagttt 41973046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 510 - 584
Target Start/End: Original strand, 24053930 - 24054004
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||  |||||||||||||    
T  24053930 aaaagaaatgtcccttgaatttaccattttgctcctataaggggcaatttggtaatctacttattggttgagttt 24054004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 482 - 584
Target Start/End: Original strand, 7389185 - 7389288
Alignment:
Q  482 atctatatacttatacta-tacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttga 580  Q
    ||||||||||| |||||| |||| |||| |||   ||||||| |||| |||||||||||||||| |  ||||||||||||||||||||||||||||||||    
T  7389185 atctatatactaatactaatactaatataaaagttaatgtccattgattttaccattttgccccaaggaggggcaatttggtaaattacaaattggttga 7389284  T
Q  581 gttt 584  Q
    ||||    
T  7389285 gttt 7389288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 510 - 584
Target Start/End: Original strand, 25346050 - 25346124
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||  |||  |||||||||||||    
T  25346050 aaaagaaatgtccattgaatttaccattttgcctctataaggggcaatttggtaatctacttattggttgagttt 25346124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 517 - 584
Target Start/End: Complemental strand, 25620778 - 25620711
Alignment:
Q  517 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    |||||| |||| ||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  25620778 atgtccattgattttactattttgcccctatgaggggcaatttggtaaattacaaattagttgagttt 25620711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 517 - 584
Target Start/End: Complemental strand, 40616158 - 40616091
Alignment:
Q  517 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||  ||| ||||||||||||||    
T  40616158 atgtcccttgaatttaccattttgctcctataagaggcaatttggtaatctactaattggttgagttt 40616091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 510 - 564
Target Start/End: Complemental strand, 40587763 - 40587709
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40587763 aaaataaatgtccattgaatttaccattttgcccctataaggggcaatttggtaa 40587709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 510 - 584
Target Start/End: Complemental strand, 41534319 - 41534245
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    |||| ||||||||| ||||||||||||||||| |||||||||| ||||||| |||||||  ||||||||||||||    
T  41534319 aaaataaatgtcccatgaatttaccattttgctcctataagggacaatttgataaattattaattggttgagttt 41534245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 516 - 584
Target Start/End: Complemental strand, 4466485 - 4466417
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||| |||| ||||||||||| ||| ||  ||||||||||||||||||||||||||||||||||||    
T  4466485 aatgtccattgattttaccattttacccttaggaggggcaatttggtaaattacaaattggttgagttt 4466417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 516 - 564
Target Start/End: Original strand, 8760723 - 8760771
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8760723 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaa 8760771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 516 - 564
Target Start/End: Complemental strand, 25836330 - 25836282
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25836330 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaa 25836282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 498 - 567
Target Start/End: Original strand, 41152672 - 41152743
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggc--aatttggtaaatt 567  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||| |||| |  |||||||||||||    
T  41152672 tatacttatataaaaagaaatgtcccttgaatttaccattttgtccctatcagggtcctaatttggtaaatt 41152743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 584
Target Start/End: Original strand, 9472168 - 9472241
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||  |||  |||||||||||||    
T  9472168 aaaagaaatgtcccttgaaattaccattttgcctctataa-gggcaatttggtaatctacttattggttgagttt 9472241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 584
Target Start/End: Complemental strand, 42245803 - 42245729
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    |||||||||||| |||||||| |||||||||||||||||||||| |||||| |||  |||  |||||||||||||    
T  42245803 aaaagaaatgtcacttgaattcaccattttgcccctataaggggtaatttgataatctacttattggttgagttt 42245729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 516 - 584
Target Start/End: Complemental strand, 25616563 - 25616494
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattac-aaattggttgagttt 584  Q
    ||||||| |||| ||||||||||||||| ||  ||||||||||||||||||||| |||||||||||||||    
T  25616563 aatgtccattgattttaccattttgcccttaagaggggcaatttggtaaattacaaaattggttgagttt 25616494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 516 - 564
Target Start/End: Original strand, 1942811 - 1942859
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||    
T  1942811 aatgtcccatgaatttaccattttgcctctataaggggcaatttggtaa 1942859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 516 - 564
Target Start/End: Complemental strand, 8162840 - 8162792
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||    
T  8162840 aatgtcccatgaatttaccattttgcccctataagggtcaatttggtaa 8162792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 517 - 584
Target Start/End: Complemental strand, 44389069 - 44389002
Alignment:
Q  517 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||||||||||||||| ||| ||||||||| ||||||||||  ||  ||||||||||||||    
T  44389069 atgtcccttgaatttaccatttttcccttataaggggtaatttggtaatctattaattggttgagttt 44389002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 517 - 564
Target Start/End: Original strand, 45435013 - 45435060
Alignment:
Q  517 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  45435013 atgtcacttgaatttaccattttgcccttataaggggcaatttggtaa 45435060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 516 - 564
Target Start/End: Original strand, 32844171 - 32844219
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||| | |||||||||||||||||| |||||||||||||||||||    
T  32844171 aatgtcccataaatttaccattttgccccgataaggggcaatttggtaa 32844219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 498 - 574
Target Start/End: Original strand, 19243239 - 19243315
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaatt 574  Q
    |||||| |||| |||||  |||||  |||| |||||| |||||||||| | |||||||||||||||| |||| ||||    
T  19243239 tatactaatataaaaagtgatgtctgttgattttacctttttgcccctcttaggggcaatttggtaatttactaatt 19243315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 498 - 574
Target Start/End: Original strand, 19316423 - 19316499
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaatt 574  Q
    |||||| |||| |||||  |||||  |||| |||||| |||||||||| | |||||||||||||||| |||| ||||    
T  19316423 tatactaatataaaaagtgatgtctgttgattttacctttttgcccctcttaggggcaatttggtaatttactaatt 19316499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 498 - 584
Target Start/End: Complemental strand, 3821281 - 3821195
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3821281 tatacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgagttt 3821195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 480 - 568
Target Start/End: Original strand, 52799011 - 52799099
Alignment:
Q  480 ttatctatatacttatactatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaatta 568  Q
    ||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||| ||||||| ||||||||||||||||||||    
T  52799011 ttatctatatacttatattatacttatattaaaagaaatgtcctttaaatttaccattttacccctattaggggcaatttggtaaatta 52799099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 498 - 584
Target Start/End: Complemental strand, 39716800 - 39716714
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||    
T  39716800 tatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggttgagttt 39716714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 516 - 584
Target Start/End: Original strand, 5752473 - 5752541
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  5752473 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaaattgttgagttt 5752541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 498 - 584
Target Start/End: Original strand, 15704115 - 15704201
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||| ||||| ||||| | || ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  15704115 tatacttatataaaaagtaatgttctttaaatttaccattttgcccctataaggggaaatttggtaaattactaattggttgagttt 15704201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 498 - 584
Target Start/End: Complemental strand, 35498615 - 35498529
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    |||||| |||| |||||||||| |||||||||||| |||||||||||||||| || |||||||||||||||| ||||||||||||||    
T  35498615 tatactaatataaaaagaaatggcccttgaatttatcattttgcccctataaaggacaatttggtaaattactaattggttgagttt 35498529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 498 - 564
Target Start/End: Original strand, 29712373 - 29712440
Alignment:
Q  498 tatacttatattaaaa-gaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29712373 tatacttatattaaaaagaaatgtcccttaaatttaccattttgcccctataaggggcaatttggtaa 29712440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 509 - 584
Target Start/End: Complemental strand, 30529350 - 30529275
Alignment:
Q  509 taaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||  |||||||||||||    
T  30529350 taaaagaaatatcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgagttt 30529275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 510 - 584
Target Start/End: Original strand, 13171641 - 13171715
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||  |||||||||||||    
T  13171641 aaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgagttt 13171715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 498 - 564
Target Start/End: Complemental strand, 35716381 - 35716315
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    ||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||    
T  35716381 tatacttatattaaaagaaatgttccatggatttaccattttgcccctataaggggcaatttggtaa 35716315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 483 - 584
Target Start/End: Original strand, 46104167 - 46104269
Alignment:
Q  483 tctatatacttatacta-tacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgag 581  Q
    |||||||||| |||||| |||| |||| |||   ||||||| |||| |||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  46104167 tctatatactaatactaatactaatataaaagttaatgtccattgattttaccattttgccccaatgaggggcaatttggtaaattacaaattggttgag 46104266  T
Q  582 ttt 584  Q
    |||    
T  46104267 ttt 46104269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 510 - 584
Target Start/End: Complemental strand, 50120028 - 50119954
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||  |||||||||||||    
T  50120028 aaaaggaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgagttt 50119954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 510 - 564
Target Start/End: Original strand, 51347504 - 51347558
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51347504 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 51347558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 498 - 564
Target Start/End: Complemental strand, 53991634 - 53991568
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    ||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||    
T  53991634 tatacttatattaaaagaaatgttccatggatttaccattttgcccctataaggggcaatttggtaa 53991568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 516 - 584
Target Start/End: Complemental strand, 12682820 - 12682752
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||| |||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  12682820 aatgtccattgattttaccattttgcccctatgaggggcaatttggtaaattataaattggttgagttt 12682752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 498 - 561
Target Start/End: Complemental strand, 24948369 - 24948306
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttgg 561  Q
    ||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  24948369 tatacttatataaaaagaaatgtcctttgaatttaccattttgctcctataaggggcaatttgg 24948306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 510 - 584
Target Start/End: Original strand, 3757742 - 3757816
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||  |||  |||||||||||||    
T  3757742 aaaagaaatgttcattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgagttt 3757816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 510 - 584
Target Start/End: Original strand, 17730449 - 17730523
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||| | |||||||||||||||||| ||||||||||||||||||||||  ||| ||||||||||||||    
T  17730449 aaaagaaatgtgctttgaatttaccattttgctcctataaggggcaatttggtaatctactaattggttgagttt 17730523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 510 - 564
Target Start/End: Original strand, 24547347 - 24547401
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24547347 aaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaa 24547401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 498 - 564
Target Start/End: Complemental strand, 39406314 - 39406248
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    ||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||    
T  39406314 tatacttatataaaaagaaatgttccttgaatttaccatttagcccctataaggggtaatttggtaa 39406248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 510 - 564
Target Start/End: Original strand, 20588578 - 20588632
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  20588578 aaaagaaatgtcccttgaattcaccattttgcctctataaggggcaatttggtaa 20588632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 510 - 584
Target Start/End: Complemental strand, 36743272 - 36743198
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    |||||||||||||||| |||||||||||||| | |||||||||||||||||||||  |||  |||||||||||||    
T  36743272 aaaagaaatgtcccttaaatttaccattttgtctctataaggggcaatttggtaatctacttattggttgagttt 36743198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 498 - 548
Target Start/End: Complemental strand, 47560301 - 47560251
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctata 548  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  47560301 tatacttatattaaaagtaatgtcccttgaatttaccattttgcccctata 47560251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 516 - 564
Target Start/End: Original strand, 8956938 - 8956986
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8956938 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaa 8956986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 516 - 564
Target Start/End: Original strand, 8986910 - 8986958
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8986910 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaa 8986958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 516 - 564
Target Start/End: Original strand, 37349808 - 37349856
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37349808 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaa 37349856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 504 - 564
Target Start/End: Complemental strand, 578681 - 578621
Alignment:
Q  504 tatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||||||||||||| | |  ||||||||||||||||||||||||| |||||||||||    
T  578681 tatattaaaagaaatgtctcattgatttaccattttgcccctataagggacaatttggtaa 578621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 516 - 584
Target Start/End: Original strand, 2116111 - 2116179
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||| |||| |||||||||||| || ||  |||||||||||||||||||| |||||||||||||||    
T  2116111 aatgtccattgattttaccattttgtccttaggaggggcaatttggtaaattataaattggttgagttt 2116179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 516 - 564
Target Start/End: Complemental strand, 9888954 - 9888906
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||    
T  9888954 aatgtcccatgaatttaccattttgcccctataagggtcaatttggtaa 9888906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 517 - 584
Target Start/End: Original strand, 16896008 - 16896075
Alignment:
Q  517 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||||||||| ||||||||| |||||||||| |||||||||  ||  ||||||||||||||    
T  16896008 atgtcccttgaatttacaattttgcccttataaggggctatttggtaatctattaattggttgagttt 16896075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 516 - 564
Target Start/End: Complemental strand, 35833478 - 35833430
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    ||||||| |||| ||||||||||||||||||| ||||||||||||||||    
T  35833478 aatgtccattgattttaccattttgcccctatgaggggcaatttggtaa 35833430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 510 - 564
Target Start/End: Original strand, 43021908 - 43021962
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    ||||||||||| ||||||||||||||| ||||| |||| ||| ||||||||||||    
T  43021908 aaaagaaatgttccttgaatttaccatcttgcctctattaggtgcaatttggtaa 43021962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 516 - 564
Target Start/End: Original strand, 50033703 - 50033750
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||  ||||||||||||||||||| ||||| ||||||||||||||    
T  50033703 aatgtcctatgaatttaccattttgcccttataa-gggcaatttggtaa 50033750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 8e-35; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 481 - 564
Target Start/End: Complemental strand, 4897593 - 4897511
Alignment:
Q  481 tatctatatacttatactatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4897593 tatctatatacttata-tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 4897511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 498 - 584
Target Start/End: Complemental strand, 15045629 - 15045543
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||    
T  15045629 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaagggtaatttggtaaattacaaatttgttgagttt 15045543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 516 - 584
Target Start/End: Complemental strand, 6969360 - 6969292
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  6969360 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaaattgttgagttt 6969292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 498 - 568
Target Start/End: Original strand, 1218522 - 1218592
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaatta 568  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||    
T  1218522 tatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaaatta 1218592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 498 - 568
Target Start/End: Original strand, 24443931 - 24444001
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaatta 568  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  24443931 tatacttatattaaaagaaatatcctttgaatttaccattttgcccctattaggggcaatttggtaaatta 24444001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 516 - 584
Target Start/End: Original strand, 4107976 - 4108044
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||| |||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  4107976 aatgtccattgattttaccatttttcccctatgaggggcaatttggtaaattacaaattggttgagttt 4108044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 504 - 584
Target Start/End: Complemental strand, 9981336 - 9981256
Alignment:
Q  504 tatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||| ||| ||||||| | |||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||    
T  9981336 tatataaaaggaaatgttcattgaatttaccattttacccctataaggggcaatttggtaaattgctaattggttgagttt 9981256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 498 - 568
Target Start/End: Original strand, 18323839 - 18323909
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaatta 568  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |   ||||||||||||||||    
T  18323839 tatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaaaagcaatttggtaaatta 18323909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 524 - 584
Target Start/End: Complemental strand, 28573885 - 28573825
Alignment:
Q  524 ttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    |||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  28573885 ttgattttaccattttgcccctaggaggggcaatttggtaaattacaaattggttgagttt 28573825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 510 - 560
Target Start/End: Complemental strand, 9737823 - 9737773
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttg 560  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9737823 aaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttg 9737773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 517 - 584
Target Start/End: Complemental strand, 33328341 - 33328274
Alignment:
Q  517 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    |||||| || ||||||||||||||| |||| ||||||||||||||||   ||| ||||||||||||||    
T  33328341 atgtcctttaaatttaccattttgctcctacaaggggcaatttggtagtctactaattggttgagttt 33328274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 529 - 582
Target Start/End: Original strand, 25529276 - 25529329
Alignment:
Q  529 tttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagt 582  Q
    ||||| ||||||| ||||||||||||||||||||||  ||| ||||||||||||    
T  25529276 tttacgattttgctcctataaggggcaatttggtaatctactaattggttgagt 25529329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 517 - 584
Target Start/End: Original strand, 35133197 - 35133263
Alignment:
Q  517 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    |||||| || |||||||||||||||| |||||| |||||||||| |||  ||| ||||||||||||||    
T  35133197 atgtcctttaaatttaccattttgcctctataa-gggcaatttgataatctactaattggttgagttt 35133263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 574
Target Start/End: Original strand, 34316957 - 34317031
Alignment:
Q  500 tacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaatt 574  Q
    |||| |||| |||||  |||||| |||| |||||| |||||||||||  |||||||||||||||| |||| ||||    
T  34316957 tactaatataaaaagtgatgtccattgattttacctttttgcccctaagaggggcaatttggtaatttactaatt 34317031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 498 - 584
Target Start/End: Original strand, 225439 - 225525
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  225439 tatacttatattaaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttaagttt 225525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 564
Target Start/End: Original strand, 108563 - 108617
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    ||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||    
T  108563 aaaagaaatgtcccttgaatttaccattttgtccccataaggggtaatttggtaa 108617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 498 - 584
Target Start/End: Complemental strand, 3088114 - 3088028
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  3088114 tatacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattattaattggttgagttt 3088028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 498 - 584
Target Start/End: Complemental strand, 25698800 - 25698714
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||    
T  25698800 tatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggttgagttt 25698714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 498 - 584
Target Start/End: Original strand, 30140506 - 30140592
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| ||||||||||||||| ||||||||||||||    
T  30140506 tatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggtaatttggtaaattactaattggttgagttt 30140592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 498 - 584
Target Start/End: Complemental strand, 33709896 - 33709810
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||||||||  |||||||||||||||||||||||| ||||||||| ||||||||||||||||||  ||||||||||||||    
T  33709896 tatacttatattaaaattaatgtcccttgaatttaccattttacccctataaagggcaatttggtaaattagtaattggttgagttt 33709810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 498 - 568
Target Start/End: Original strand, 41689279 - 41689349
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaatta 568  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||    
T  41689279 tatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattatgggcaatttggtaaatta 41689349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 510 - 584
Target Start/End: Original strand, 30754425 - 30754499
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||  |||||||||||||    
T  30754425 aaaagaaatgtcctttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgagttt 30754499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 510 - 564
Target Start/End: Complemental strand, 36887039 - 36886985
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36887039 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 36886985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 498 - 564
Target Start/End: Complemental strand, 12592551 - 12592485
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    ||||||||||| |||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||    
T  12592551 tatacttatataaaaagaaatgtcccatgaatttaccagtttacccctataaggggcaatttggtaa 12592485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 516 - 564
Target Start/End: Complemental strand, 6305514 - 6305466
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6305514 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaa 6305466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 516 - 564
Target Start/End: Complemental strand, 43138611 - 43138563
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43138611 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaa 43138563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 517 - 580
Target Start/End: Complemental strand, 12422408 - 12422345
Alignment:
Q  517 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttga 580  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||  ||| ||||||||||    
T  12422408 atgtcctttgattttaccattttgcccctataaggggcaatttggtaatctactaattggttga 12422345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 498 - 553
Target Start/End: Complemental strand, 26602251 - 26602196
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataagggg 553  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||    
T  26602251 tatacttatataaaaagaaatgtcccttgaatttaccattttacccttataagggg 26602196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 564
Target Start/End: Complemental strand, 17643456 - 17643402
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||| |||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  17643456 aaaataaatgtcccttgaatttatcattttgcccttataaggggcaatttggtaa 17643402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 516 - 564
Target Start/End: Complemental strand, 754509 - 754461
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||    
T  754509 aatgtcccatgaatttaccattttgcccctataagggtcaatttggtaa 754461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 498 - 568
Target Start/End: Original strand, 34715607 - 34715670
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaatta 568  Q
    |||||||||||||||||||||||||       |||||||||||||||||| ||||||||||||||||||||    
T  34715607 tatacttatattaaaagaaatgtcc-------ttaccattttgcccctattaggggcaatttggtaaatta 34715670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 498 - 564
Target Start/End: Complemental strand, 42977912 - 42977849
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    ||||||||||| |||  |||||||| |||   |||||||||||||||||||||||||||||||||||    
T  42977912 tatacttatataaaagaaaatgtccattg---ttaccattttgcccctataaggggcaatttggtaa 42977849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 516 - 584
Target Start/End: Complemental strand, 34727400 - 34727331
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattac-aaattggttgagttt 584  Q
    ||||||| |||| |||||||||||| |  || ||| ||||||||| |||||||| |||||||||||||||    
T  34727400 aatgtccattgattttaccattttgtctttagaagaggcaatttgataaattacaaaattggttgagttt 34727331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 498 - 584
Target Start/End: Original strand, 28607225 - 28607311
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    |||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28607225 tatacttatattaaaataaatgtccattgaatttaccattttgtccctataaggggcaatttggtaaattacaaattggttgagttt 28607311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 498 - 584
Target Start/End: Complemental strand, 10050272 - 10050186
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||    
T  10050272 tatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttgataaattactaattggttgagttt 10050186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 498 - 564
Target Start/End: Original strand, 17836971 - 17837037
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17836971 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 17837037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 498 - 568
Target Start/End: Original strand, 2952761 - 2952831
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaatta 568  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  2952761 tatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaatta 2952831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 498 - 568
Target Start/End: Complemental strand, 9545858 - 9545788
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaatta 568  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  9545858 tatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaatta 9545788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 498 - 584
Target Start/End: Original strand, 24520870 - 24520956
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||| |||||||||||||||||||||||  |||||||| |||||||| ||||||||||||||||| ||||||||||||||    
T  24520870 tatacttatataaaaagaaatgtcccttgaatttataattttgcctctataaggagcaatttggtaaattactaattggttgagttt 24520956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 498 - 564
Target Start/End: Complemental strand, 32677266 - 32677200
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32677266 tatacttatattaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 32677200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 498 - 564
Target Start/End: Complemental strand, 9920992 - 9920926
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  9920992 tatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggcaatttggtaa 9920926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 498 - 584
Target Start/End: Original strand, 18096495 - 18096581
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||  |||||||| |||||    
T  18096495 tatacttatataaaaagaaatgtcctttgaatttaccattttgcccctataaggggtaatttggcaaattattaattggttaagttt 18096581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 510 - 584
Target Start/End: Original strand, 19486205 - 19486279
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  |||||||||||||    
T  19486205 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgagttt 19486279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 498 - 568
Target Start/End: Complemental strand, 4292865 - 4292795
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaatta 568  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||| | ||||||||||||||||||    
T  4292865 tatacttatattaaaagaaatgtcctttgaatttaccattttgctcctattaagggcaatttggtaaatta 4292795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 510 - 584
Target Start/End: Complemental strand, 10876640 - 10876568
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||  |||  |||||||||||||    
T  10876640 aaaagaaatgtcccttgaatttaccattttgcccc--taaggggcaatttggtaatctacttattggttgagttt 10876568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 500 - 584
Target Start/End: Complemental strand, 19486192 - 19486108
Alignment:
Q  500 tacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||| |||  |||| ||| ||||||||| |||||||||||||||||||||||||||||||  |||  |||||||||||||    
T  19486192 tacttatataaaagaaaatatccattgaatttatcattttgcccctataaggggcaatttggtaatctacttattggttgagttt 19486108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 564
Target Start/End: Original strand, 42781027 - 42781081
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||    
T  42781027 aaaagaaatgtcccttgaatttatcattttgtccctgtaaggggcaatttggtaa 42781081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 8e-32; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 498 - 584
Target Start/End: Original strand, 16300393 - 16300479
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  16300393 tatacttatattaaaattaatgtcccttgaatttaccattttgctcctataaggggcaatttggtaaattactaattggttgagttt 16300479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 498 - 564
Target Start/End: Complemental strand, 33075739 - 33075673
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33075739 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 33075673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 498 - 584
Target Start/End: Original strand, 52306073 - 52306159
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  52306073 tatacttatataaaaagaaatatccctttaatttaccattttgcccctataaggggcaatttgataaattactaattggttgagttt 52306159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 498 - 581
Target Start/End: Original strand, 47134708 - 47134791
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgag 581  Q
    ||||||||||| ||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  47134708 tatacttatataaaaggtaatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 47134791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 498 - 568
Target Start/End: Original strand, 1367295 - 1367365
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaatta 568  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  1367295 tatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaatta 1367365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 498 - 564
Target Start/End: Complemental strand, 22198990 - 22198924
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22198990 tatacttatattaaaagaaatgtcccttgaatttatcattttgcccctataaggggcaatttggtaa 22198924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 498 - 568
Target Start/End: Original strand, 4890102 - 4890172
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaatta 568  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||    
T  4890102 tatacttatattaaaagaaatgtcctttgaatttaccattttgcctctattaggggcaatttggtaaatta 4890172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 498 - 568
Target Start/End: Complemental strand, 17364686 - 17364616
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaatta 568  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  17364686 tatacttatattaaaagaaatatcctttgaatttaccattttgcccctattaggggcaatttggtaaatta 17364616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 498 - 568
Target Start/End: Complemental strand, 29188383 - 29188313
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaatta 568  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||    
T  29188383 tatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaaatta 29188313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 498 - 564
Target Start/End: Complemental strand, 29844964 - 29844898
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  29844964 tatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggcaatttggtaa 29844898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 498 - 568
Target Start/End: Original strand, 33359704 - 33359774
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaatta 568  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||    
T  33359704 tatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaaatta 33359774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 510 - 584
Target Start/End: Complemental strand, 46626395 - 46626321
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  |||||||||||||    
T  46626395 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgagttt 46626321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 498 - 564
Target Start/End: Original strand, 1826797 - 1826863
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    ||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||    
T  1826797 tatacttatattaaaagtaatgtcccttgaatttaccattttggctctataaggggcaatttggtaa 1826863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 516 - 584
Target Start/End: Original strand, 5426238 - 5426306
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||| |||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  5426238 aatgtccattgattttaccattttgcccttagaaggggcaatttggtaaattacaaattggttgagttt 5426306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 510 - 584
Target Start/End: Complemental strand, 19322415 - 19322341
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||   |||  |||||||||||||    
T  19322415 aaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtattctacttattggttgagttt 19322341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 501 - 564
Target Start/End: Original strand, 10766193 - 10766256
Alignment:
Q  501 acttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    ||||||||||||||||||||||  || ||||||||||||||||||||||||| |||||||||||    
T  10766193 acttatattaaaagaaatgtcctatggatttaccattttgcccctataagggtcaatttggtaa 10766256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 498 - 560
Target Start/End: Original strand, 42678378 - 42678440
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttg 560  Q
    ||||||||||| |||||||||||||| |||||||||||||||  |||||||||||||||||||    
T  42678378 tatacttatataaaaagaaatgtcccatgaatttaccattttatccctataaggggcaatttg 42678440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 515 - 564
Target Start/End: Original strand, 38894776 - 38894825
Alignment:
Q  515 aaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38894776 aaatgtccattgaatttaccattttgcccctataaggggcaatttggtaa 38894825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 516 - 564
Target Start/End: Original strand, 28570747 - 28570795
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||    
T  28570747 aatgtcccatgaatttaccattttgcccctataagggtcaatttggtaa 28570795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 517 - 584
Target Start/End: Original strand, 19400754 - 19400821
Alignment:
Q  517 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||||||||||||||||||| ||||||||| |||| |||||  ||  ||||||||||||||    
T  19400754 atgtcccttgaatttaccattttgcccatataaggggtaattcggtaatctattaattggttgagttt 19400821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 517 - 584
Target Start/End: Original strand, 50557850 - 50557916
Alignment:
Q  517 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||| |||||||||||||||| || ||||||||||||||||||||  ||| ||||||||||||||    
T  50557850 atgtcccatgaatttaccattttgtcc-tataaggggcaatttggtaatctactaattggttgagttt 50557916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 510 - 568
Target Start/End: Complemental strand, 10698189 - 10698131
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaatta 568  Q
    |||||||||||||  | |||||||||||||||||||| |||||||| ||||||||||||    
T  10698189 aaaagaaatgtccaataaatttaccattttgcccctagaaggggcattttggtaaatta 10698131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 517 - 584
Target Start/End: Complemental strand, 51971335 - 51971269
Alignment:
Q  517 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    |||||||||||| ||||||||||| |||||||| ||| ||||||||||  ||  ||||||||||||||    
T  51971335 atgtcccttgaagttaccattttgtccctataa-gggtaatttggtaatctattaattggttgagttt 51971269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 498 - 564
Target Start/End: Original strand, 43116052 - 43116118
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||| |||| |||| | |||||| |||||||| | ||||||||||||  ||||||||||||||||    
T  43116052 tatactaatataaaaatacatgtccattgaatttccaattttgcccctaggaggggcaatttggtaa 43116118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 482 - 564
Target Start/End: Complemental strand, 8397 - 8317
Alignment:
Q  482 atctatatacttatactatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    ||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8397 atctatatacttat--tatacttatattaaaagaaatgtcccatgaatttaccattttgcccctataaggggcaatttggtaa 8317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 498 - 568
Target Start/End: Complemental strand, 20662 - 20592
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaatta 568  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  20662 tatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaatta 20592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 7e-26; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 516 - 584
Target Start/End: Original strand, 18682511 - 18682579
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  18682511 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaaattgttgagttt 18682579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 498 - 564
Target Start/End: Complemental strand, 11955608 - 11955542
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  11955608 tatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggcaatttggtaa 11955542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 498 - 584
Target Start/End: Original strand, 22519194 - 22519279
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  22519194 tatacttctattaaaagaa-tgtccattgaatttaccattttgcccctataaggggcaatttagtaaattattaattggttgagttt 22519279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 516 - 584
Target Start/End: Original strand, 8393585 - 8393653
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  8393585 aatgtcctttgaatttaccattttgcccctataaggggcaatttggtaaattacaaaattgttgagttt 8393653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 509 - 584
Target Start/End: Complemental strand, 19369013 - 19368938
Alignment:
Q  509 taaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||  |||||||||||||    
T  19369013 taaaagaaatgtcccttgattttaccattttgcccctataaggggcaatttggtaatctacttattggttgagttt 19368938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 498 - 564
Target Start/End: Original strand, 22473648 - 22473714
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    ||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||    
T  22473648 tatacttatattaaaagaaatgttccatggatttaccattttgcccctataaggggcaatttggtaa 22473714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 510 - 584
Target Start/End: Complemental strand, 29530632 - 29530558
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||  |||||||||||||    
T  29530632 aaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctacttattggttgagttt 29530558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 519 - 584
Target Start/End: Complemental strand, 26777912 - 26777847
Alignment:
Q  519 gtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    |||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26777912 gtccattgattttaccattttgcccctatgaggggcaatttggtaaattacaaattggttgagttt 26777847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 498 - 584
Target Start/End: Complemental strand, 19895728 - 19895642
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    |||||||||||  ||  |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||  ||||||||||||||    
T  19895728 tatacttatatagaagaaaatgtccattgaatttaccattttgcccttataaagggcaatttggtaaattagtaattggttgagttt 19895642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 510 - 564
Target Start/End: Original strand, 35855220 - 35855274
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35855220 aaaagaaatgtcccttaaatttaccattttgcccctataaggggcaatttggtaa 35855274  T

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Target: chr3; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 510 - 584
Target Start/End: Complemental strand, 55297414 - 55297340
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||||||| |||||||||||||| ||||||||| ||| ||||||||||||||  ||||||||||||||    
T  55297414 aaaagaaatgtccctcgaatttaccattttacccctataaagggtaatttggtaaattattaattggttgagttt 55297340  T

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Target: chr3; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 517 - 582
Target Start/End: Complemental strand, 28981881 - 28981816
Alignment:
Q  517 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagt 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   || ||||||||||||    
T  28981881 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgagt 28981816  T

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Target: chr3; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 516 - 584
Target Start/End: Complemental strand, 4139412 - 4139344
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||| |||| |||||||||||| |||||| |||||||||||||||||||||||||||||| |||||    
T  4139412 aatgtccattgattttaccattttgtccctattaggggcaatttggtaaattacaaattggtttagttt 4139344  T

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Target: chr3; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 516 - 584
Target Start/End: Original strand, 53800521 - 53800589
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||| |||| ||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||    
T  53800521 aatgtccattgattttaccattttgcccttaggaggggcaatttggtaaattacaaattggttgagttt 53800589  T

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Target: chr3; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 510 - 564
Target Start/End: Complemental strand, 8528174 - 8528120
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  8528174 aaaagaaatgtcccttgaatttaccattctgtccctataaggggcaatttggtaa 8528120  T

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Target: chr3; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 517 - 584
Target Start/End: Complemental strand, 40831990 - 40831923
Alignment:
Q  517 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||||||||||||||||||||| |||||||||| ||||| |||||  ||| ||||||||||||||    
T  40831990 atgtcccttgaatttaccattttgctcctataagggacaattcggtaatctactaattggttgagttt 40831923  T

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Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 510 - 564
Target Start/End: Complemental strand, 26102221 - 26102167
Alignment:
Q  510 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    ||||||||||||| ||||||||||||||||||||||||||| || ||||||||||    
T  26102221 aaaagaaatgtcctttgaatttaccattttgcccctataagaggtaatttggtaa 26102167  T

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Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 498 - 568
Target Start/End: Original strand, 33872209 - 33872279
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaatta 568  Q
    |||||| |||| |||||||||||||  |||||||||||||||| ||||| ||||| || ||||||||||||    
T  33872209 tatactaatataaaaagaaatgtccgatgaatttaccattttgtccctagaagggccattttggtaaatta 33872279  T

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Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 517 - 558
Target Start/End: Complemental strand, 11602228 - 11602187
Alignment:
Q  517 atgtcccttgaatttaccattttgcccctataaggggcaatt 558  Q
    |||||| |||| ||||||||||||||||||||||||||||||    
T  11602228 atgtccgttgattttaccattttgcccctataaggggcaatt 11602187  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 498 - 568
Target Start/End: Original strand, 9563230 - 9563300
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaatta 568  Q
    |||||| |||| |||||| |||||  || ||||||||||||||||| || || ||||| ||||||||||||    
T  9563230 tatactaatataaaaagagatgtctattaaatttaccattttgcccatagaaagggcattttggtaaatta 9563300  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 574
Target Start/End: Complemental strand, 2847390 - 2847341
Alignment:
Q  525 tgaatttaccattttgcccctataaggggcaatttggtaaattacaaatt 574  Q
    ||||||| ||||||||||||||  |||||||||||||||| |||| ||||    
T  2847390 tgaattttccattttgcccctaagaggggcaatttggtaatttactaatt 2847341  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 564
Target Start/End: Complemental strand, 15321297 - 15321260
Alignment:
Q  527 aatttaccattttgcccctataaggggcaatttggtaa 564  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  15321297 aatttacaattttgcccctataaggggcaatttagtaa 15321260  T

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Target: scaffold0759 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 516 - 584
Target Start/End: Complemental strand, 5956 - 5888
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  5956 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaaattacaaaattgttgagttt 5888  T

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Target: scaffold0051 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 516 - 584
Target Start/End: Original strand, 62084 - 62152
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattacaaattggttgagttt 584  Q
    ||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  62084 aatgtccattgattttaccattttgcccctatgaggggcaatttggtaaattacaaattggttgagttt 62152  T

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Target: scaffold0069 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 498 - 567
Target Start/End: Original strand, 11777 - 11846
Alignment:
Q  498 tatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaatt 567  Q
    ||||||||||||||||||||||||  |||||||||||||||||||  ||| |||||||||||||||||||    
T  11777 tatacttatattaaaagaaatgtcatttgaatttaccattttgcctttattaggggcaatttggtaaatt 11846  T

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Target: scaffold0381 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 516 - 564
Target Start/End: Original strand, 9591 - 9639
Alignment:
Q  516 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 564  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||    
T  9591 aatgtcccatgaatttaccattttgcccctataagggtcaatttggtaa 9639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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