View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3678_high_33 (Length: 286)
Name: NF3678_high_33
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_high_33 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 1558047 - 1558314
Alignment:
| Q |
1 |
gtgttcttgccagcaaaccattatttatccattgttatttgcgatgttccgataacagtttacatttgtcggcttatagccatattctttttctatgcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1558047 |
gtgttcttgccagcaaaccattatttatccattgttatttgcgatgttccgataacagtttacatttgtcggcttatagccatattctttttctatgcta |
1558146 |
T |
|
| Q |
101 |
aatnnnnnnnnctgtttttgttttgttgttgatgagataaagcaaatgtagtaacatgagtttttacagctgtcatgtggttttatcaagtttcaaatta |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1558147 |
aataaaaaaaactgtttttgttttgttgttgatgagataaagcaaatgtagtaacatgagtttttacagctgtcatgtggttttatcaagtttcaaatta |
1558246 |
T |
|
| Q |
201 |
ttgggttataaaaaatagtgctaatggagtttaaattatgcaggatttcatttaagattctaacatat |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1558247 |
ttgggttataaaaaatagtgctaatggagtttaaattatgcaggatttcatttaagattctaacatat |
1558314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 265
Target Start/End: Original strand, 38981800 - 38981846
Alignment:
| Q |
219 |
tgctaatggagtttaaattatgcaggatttcatttaagattctaaca |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38981800 |
tgctaatggagtttaaattatgcaggatttaatttaagattctaaca |
38981846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 23891392 - 23891488
Alignment:
| Q |
4 |
ttcttgccagcaaaccattatttatccattgttatttgcgatgttccgataacagtttacatttgtcggcttatagccatattctttttctatgctaa |
101 |
Q |
| |
|
|||||||| | |||| |||||||||||||||||| |||||||||| ||||||||||| |||||||| ||||||||||||| || |||||||| ||||| |
|
|
| T |
23891392 |
ttcttgcctgaaaacaattatttatccattgttagttgcgatgtttcgataacagttcacatttgtaggcttatagccat-ttttttttctacgctaa |
23891488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University