View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3678_high_34 (Length: 284)
Name: NF3678_high_34
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_high_34 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 153 - 269
Target Start/End: Complemental strand, 42885024 - 42884908
Alignment:
| Q |
153 |
tataaccaaatgcatcaatatactctgcaacagtacatgtataatgtgtaaagcacgataagatttcaaagggttgtttcaaaattatcatctatatata |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42885024 |
tataaccaaatgcatcaatatactctgcaacagtacatgtataatgtgtaaagcacgataagatttcaaagggttgtttcaaaattatcatctatatata |
42884925 |
T |
|
| Q |
253 |
catcacatcatgtctgt |
269 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
42884924 |
catcacatcatgtctgt |
42884908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 42885590 - 42885466
Alignment:
| Q |
1 |
atgaagaggcagaaaaaacagatagctcctgttttatctaaatctcatttgctcagtcactcataatcaaaaccgaccattattcatttgttgttattca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42885590 |
atgaagaggcagaaaaaacagatagctcctgttttatctaaatctcatttgctcagtcactcataatcaaaaccgaccattattcatttgttgttattcg |
42885491 |
T |
|
| Q |
101 |
ttaatgtgatgaacaacgtttatag |
125 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
42885490 |
ttaatgtgatgaataacgtttatag |
42885466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University