View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3678_high_35 (Length: 275)
Name: NF3678_high_35
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_high_35 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 26 - 270
Target Start/End: Complemental strand, 5242627 - 5242385
Alignment:
| Q |
26 |
gtttgtttgaactataaaatttctattccatcagttagttactagccaccattaatcctttcatttttccctcaattagtaacaatttattatacttatt |
125 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| ||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
5242627 |
gtttctttgaactataaaatttctatttcatcagttagttactagccaccaataacccttttatttt-ccctcaattagtaacaatccattatacttatt |
5242529 |
T |
|
| Q |
126 |
acatatcctctcatttcttcttacgttttaattttccatcaattttgctttccataacaatttaccatcttctttttatgtattttatgttgcagcaaaa |
225 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5242528 |
atatc-cctctcatttcttcttacgttttaattttccatcaattttgctttccataacaatttaccatcttctttttttgtattttatgttgcagcaaaa |
5242430 |
T |
|
| Q |
226 |
aactccaagaagaaatttaaagatagctccatcttctgtgctgct |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5242429 |
aactccaagaagaaatttaaagatagctccatcttctgtgatgct |
5242385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 11797952 - 11797886
Alignment:
| Q |
58 |
agttagttactagccaccattaatcctttcatttttccctcaattagtaacaatttattatacttatt |
125 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||| ||||||||||||||| |||||||||||| |
|
|
| T |
11797952 |
agttagttactagccaccattaaccctttca-ttttccttcaattagtaacaatccattatacttatt |
11797886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 8759686 - 8759621
Alignment:
| Q |
58 |
agttagttactagccaccattaatcctttcatttttccctcaattagtaacaatttattatacttat |
124 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||| |||||||||||||| ||||||||||| |
|
|
| T |
8759686 |
agttagttactagccaccattaaccctttca-ttttccttcaattagtaacaacccattatacttat |
8759621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 8015256 - 8015190
Alignment:
| Q |
58 |
agttagttactagccaccattaatcctttcatttttccctcaattagtaacaatttattatacttatt |
125 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||| |||||||||||||| |||||||||||| |
|
|
| T |
8015256 |
agttagttactagccaccattaaccctttca-ttttccttcaattagtaacaacccattatacttatt |
8015190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University