View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_high_36 (Length: 264)
Name: NF3678_high_36
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 32804295 - 32804398
Alignment:
| Q |
142 |
gtaacgacgccattgttgaacttgaaatttagcgggaaatgaaagattgttgaagaaatcgtttactccttttcatttaaaaagacagaaacgccccttc |
241 |
Q |
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| T |
32804295 |
gtaacgacgccattgttgaacttgaaatttagcgggaaatgaaagattgttgaagaaatcgtttactccttttcatttaaaaagacagaaacgccccttc |
32804394 |
T |
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| Q |
242 |
cata |
245 |
Q |
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|||| |
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| T |
32804395 |
cata |
32804398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 32804169 - 32804234
Alignment:
| Q |
19 |
ttagggacatagagtcgaagcctgaatagtagagaatgtcggcggcttcgaaaatggtttggcgag |
84 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32804169 |
ttagggacatagagtcgaagcctgaatagtagagaatgtcggcggcttcgaaaatggtttggcgag |
32804234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 49028986 - 49029051
Alignment:
| Q |
19 |
ttagggacatagagtcgaagcctgaatagtagagaatgtcggcggcttcgaaaatggtttggcgag |
84 |
Q |
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| T |
49028986 |
ttagggacatggagacgaagcctgaatcgaggagaatgtctgcggcgtcgaaaatggtttcgcgag |
49029051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 49029196 - 49029248
Alignment:
| Q |
188 |
ttgttgaagaaatcgtttactccttttcatttaaaaagacagaaacgccccttc |
241 |
Q |
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||||||||||||||||| |||||||| |||| |||||||||||||| ||||||| |
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| T |
49029196 |
ttgttgaagaaatcgtt-actcctttccattcaaaaagacagaaacaccccttc |
49029248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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