View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_high_39 (Length: 251)
Name: NF3678_high_39
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_high_39 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 56 - 237
Target Start/End: Complemental strand, 26614503 - 26614322
Alignment:
| Q |
56 |
atgttgtatccatttttcaagttgatctaaaagatgggaaacacaacgattgaaagaaagagaggaacaacgatttaaagcaatacactacactaacata |
155 |
Q |
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| T |
26614503 |
atgttgtatcaatttttcaagttgttctaaaagatgggaaacacaacgattgaaagaaagagaggaacaacgatttaaagcaatacactacactaacata |
26614404 |
T |
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| Q |
156 |
atatctcttacattcatattatgtgcacctttaagctttcatctactttcaccttaatccttaacctcttatacattctttt |
237 |
Q |
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| T |
26614403 |
atatctcttacattcatattatatgcacctttaaactttcatctactttcaccttaatccttaacctcttatacattctttt |
26614322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 44 - 234
Target Start/End: Complemental strand, 26637961 - 26637771
Alignment:
| Q |
44 |
attgattcggtgatgttgtatccatttttcaagttgatctaaaagatgggaaacacaacgattgaaagaaagagaggaacaacgatttaaagcaatacac |
143 |
Q |
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| T |
26637961 |
attggttccgtggtgttatatccatttctcaagttgttctacaagaagggaaagacaacgatcgaaagaaagagaggaactaagattaaaaacaatacac |
26637862 |
T |
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| Q |
144 |
tacactaacataatatctcttacattcatattatgtgcacctttaagctttcatctactttcaccttaatccttaacctcttatacattct |
234 |
Q |
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| T |
26637861 |
tacactaacataatatctcttactttcatattatatgcacctttaagctttcacctactttcaacttaatccttaacctcttattcattct |
26637771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 36 - 234
Target Start/End: Complemental strand, 26629582 - 26629384
Alignment:
| Q |
36 |
aaatagacattgattcggtgatgttgtatccatttttcaagttgatctaaaagatgggaaacacaacgattgaaagaaagagaggaacaacgatttaaag |
135 |
Q |
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||||||| |||| ||||||| |||||||||||||| |||||||| |||| |||| |||||| |||||||| ||||||||||||||||| | |||| ||| |
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| T |
26629582 |
aaatagatattggttcggtggtgttgtatccatttctcaagttgttctacaagaagggaaagacaacgatcgaaagaaagagaggaactaagattaaaaa |
26629483 |
T |
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| Q |
136 |
caatacactacactaacataatatctcttacattcatattatgtgcacctttaagctttcatctactttcaccttaatccttaacctcttatacattct |
234 |
Q |
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| T |
26629482 |
caatagactaaactaacataatatctcttactttcatattatatgcaccattaagctatcacctactttcaacttaattcttaacctcttattcattct |
26629384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 237
Target Start/End: Complemental strand, 26717402 - 26717309
Alignment:
| Q |
144 |
tacactaacataatatctcttacattcatattatgtgcacctttaagctttcatctactttcaccttaatccttaacctcttatacattctttt |
237 |
Q |
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||||||| ||| || ||||||| ||||||||||| ||||||||||| |||||||||| ||||| ||| ||||||||||| ||| ||||||||| |
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| T |
26717402 |
tacactatcattatttctcttatattcatattatatgcacctttaacctttcatctattttcaactttctccttaacctcctattcattctttt |
26717309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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