View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_high_41 (Length: 248)
Name: NF3678_high_41
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 52600872 - 52601065
Alignment:
| Q |
1 |
ataaaaatcttgttcgccttctcggatgttgctcagatggacctcaaagaatacttgtttacgaatacatgaagaacagaagtttggacttctttataca |
100 |
Q |
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| T |
52600872 |
ataaaaatcttgttcgccttctcggatgttgctcagatggacctcaaagaatacttgtttacgaatacatgaagaacagaagtttggacttctttataca |
52600971 |
T |
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| Q |
101 |
tggtatatatcccaatgtccattctatatctttatactatacattttatccttcggaaatagtatttttcttgaagctatgaaagaactgaata |
194 |
Q |
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| T |
52600972 |
tggtatatatcccaatgtccattctatatctttatactatacattttatccttcggaaatagtatttttcttgaagctatgaaagaactgaata |
52601065 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 16912353 - 16912268
Alignment:
| Q |
3 |
aaaaatcttgttcgccttctcggatgttgctcagatggacctcaaagaatacttgtttacgaatacatgaagaacagaagtttgga |
88 |
Q |
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|||||| | ||||||||||| ||| |||| |||||| ||||||||||||||| |||| ||||||||||| ||| |||||||||| |
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| T |
16912353 |
aaaaatttggttcgccttcttggaagttgtatagatggtcctcaaagaatacttatttatgaatacatgaaaaaccgaagtttgga |
16912268 |
T |
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