View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_low_10 (Length: 485)
Name: NF3678_low_10
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_low_10 |
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| [»] scaffold0086 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 223 - 352
Target Start/End: Complemental strand, 5188256 - 5188125
Alignment:
| Q |
223 |
ttgaaggcttgaagtttcatttacct--taaacgcacactgcaatgttgaaacactgtttgaaaggtatgatatctttacacatcttgcttacttccaac |
320 |
Q |
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| T |
5188256 |
ttgaaggcttgaagtttcatttacctattaaacgcacactgcaatgttgaaacactgtttgaaaggtatgatatctttacgcatcttgcttacttccaac |
5188157 |
T |
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| Q |
321 |
gtgtaattttaattcgatctgagttgatattc |
352 |
Q |
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| T |
5188156 |
gtgtaattttaattcgatctgagttgatattc |
5188125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 5242414 - 5242328
Alignment:
| Q |
1 |
tttaaagatagctccatcttctgtaatgctataacaatgtgttttaactttttaatcttcaattatatttggccattttctcatttc |
87 |
Q |
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| T |
5242414 |
tttaaagatagctccatcttctgtgatgctataacaatgtgttttaattttttaatcttcaattatatttggccattttctcatttc |
5242328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 397 - 471
Target Start/End: Complemental strand, 5188080 - 5188006
Alignment:
| Q |
397 |
gtagcatttgatccgcacacattttccaacatagagaaatatgttaacactgttaatattagtagcaaatgaaga |
471 |
Q |
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| T |
5188080 |
gtaggatttgatccgcacacattttccaacatagacaaatatgttaacaccatgaatattagtagcaaatgaaga |
5188006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 218 - 352
Target Start/End: Complemental strand, 47668 - 47532
Alignment:
| Q |
218 |
ttaccttgaaggcttgaagtttcatttaccttaaacgcacactgcaatgttgaaacac--tgtttgaaaggtatgatatctttacacatcttgcttactt |
315 |
Q |
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| T |
47668 |
ttaccttgaagacttgaagtttcatttaccccaaatgaacactgcaacgttgaaatacaatatttgaaaggtatgatatctttacacatcttacttactt |
47569 |
T |
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| Q |
316 |
ccaacgtgtaattttaattcgatctgagttgatattc |
352 |
Q |
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| T |
47568 |
ccaacgtgtaattttaatttgatatgagttgatattc |
47532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 47779 - 47735
Alignment:
| Q |
133 |
caccattgatagtcaatagtatatgcaccaatttcctttcattat |
177 |
Q |
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| T |
47779 |
caccattgatagtcaatagtatatgcagcaatttgctttcattat |
47735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 218 - 352
Target Start/End: Original strand, 25133359 - 25133493
Alignment:
| Q |
218 |
ttaccttgaaggcttgaagtttcatttaccttaaacgcacactgcaatgttgaaacactgtttgaaaggtatgatatctttacacatcttgcttacttcc |
317 |
Q |
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| T |
25133359 |
ttactttgaaggcttgaagtttcatttaccctaaagacacactacaacattgaaataatatttgaaaggtaggctgtctttacacatgttacttacttcc |
25133458 |
T |
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| Q |
318 |
aacgtgtaattttaattcgatctgagttgatattc |
352 |
Q |
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| T |
25133459 |
aacctctaattttaattcgattgaagttgatattc |
25133493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 25133137 - 25133194
Alignment:
| Q |
99 |
tcaattgatttgcagttataatctaatatgccttcaccattgatagtcaatagtatat |
156 |
Q |
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| T |
25133137 |
tcaattgatttgccgttataagttaatatgcttccaccattgatagtgaatagtatat |
25133194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 25133241 - 25133289
Alignment:
| Q |
168 |
ctttcattatactgcattcattcttaggcaattatgaaattagactaat |
216 |
Q |
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| T |
25133241 |
ctttcattatactacattcatttttaagtgattatgaaattagactaat |
25133289 |
T |
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