View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3678_low_11 (Length: 482)
Name: NF3678_low_11
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 136 - 467
Target Start/End: Original strand, 38635854 - 38636185
Alignment:
| Q |
136 |
gataaacatgaggtaataatttaatttcaattgtaaaattatcaaatcagcaccttgtgaggcgtttggtgacattagcattagcaccaagatctgctgg |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38635854 |
gataaacatgaggtaataatttaatttcaattgtaaaattatcaaatcagcaccttgtgaggcgtttggtgacattagcattagcaccaagatctgctgg |
38635953 |
T |
|
| Q |
236 |
gttgatcacaagattttggatatcttgaagtacttttctgtttcttccttcaacccccatattcttctgcttattctcacctaattccattaacaaaaat |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38635954 |
gttgatcacaagattttggatatcttgaagtacttttctgtttcttccttcaacccccatattcttctgcttattctcacctaattccattaacaaaaat |
38636053 |
T |
|
| Q |
336 |
catagatcagacattaattcactgaacattttccagagaatcatgtaaaccttaatactcaactaaaccaccctcagatttcatttcaaaatcaatgaaa |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38636054 |
catagatcagacattaattcactgaacattttccagagaatcacgtaaaccctaatacttaactaaaccaccctcagatttcatttcaaaatcaatgaaa |
38636153 |
T |
|
| Q |
436 |
atttgatagacccatttacacactgaacaaat |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
38636154 |
atttgatagacccatttacacactgaacaaat |
38636185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 38635741 - 38635818
Alignment:
| Q |
18 |
atagcaacagcaaatataccttgttcttctctgctgcggcttgagcaagagccgctaactgagtcctgtaacaacaac |
95 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
38635741 |
atagcaacagcaaatgtaccttgttcttctcggctgcggcttgagcaagagccgctaactgagccctgcaacaacaac |
38635818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University