View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_low_12 (Length: 480)
Name: NF3678_low_12
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_low_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 16 - 480
Target Start/End: Complemental strand, 1114773 - 1114309
Alignment:
| Q |
16 |
atacaacttcgaaggatcaaaccccatttctttgactgaattaacagcctcaacaaatctagaatgcttggtgaatgctacacaaggaaaattggatacc |
115 |
Q |
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| T |
1114773 |
atacaacttcgaaggatcaaaccccatttctttgactgaattaacagcctcaacaaatctagaatgcttggtgaatgctacacaaggaaaattggatacc |
1114674 |
T |
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| Q |
116 |
aaactggaaatagaactttgaggtacaccaagcttcctcaaaacctcaatgttcggaacagaatcattaaccatggaatcattataaaagttccatgatc |
215 |
Q |
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| T |
1114673 |
aaactggaaatagaactttgaggtacaccaagcttcctcaaaacctcaatgttcggaacagaatcattaaccatggaatcattataaaagttccatgatc |
1114574 |
T |
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| Q |
216 |
cacgcctcaaagctaaaactacctttttatcatcgcaaactaggcttttaagaatcttgtaacgaggtattattgttttctctaagcttgctgtcaaaaa |
315 |
Q |
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| T |
1114573 |
cacgcctcaaagctaaaactacctttttatcatcgcaaactaggcttttaagaatcttgtaacgaggtattattgttttctctaagcttgctgtcaaaaa |
1114474 |
T |
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| Q |
316 |
cttgtcaccaatcaagattttggggaaatcaatggttgtagccccaatggattgcaaaaacttgagctttggcaaaagtgtcttatcagattttgataaa |
415 |
Q |
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| T |
1114473 |
cttgtcaccaatcaagattttggggaaatcaatggttgaagccccaatggattgcaaaaacttgagctttggcaaaagtgtcttatcagattttgataaa |
1114374 |
T |
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| Q |
416 |
agtacaaaagggtgtttcttaacaaggcttgataactgagaatcagagaaaccatagcttctgaa |
480 |
Q |
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| T |
1114373 |
agtacaaaagggtgtttcttaacaaggcttgataactgagaatcagagaaaccatagcttctgaa |
1114309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 27 - 472
Target Start/End: Original strand, 17377037 - 17377485
Alignment:
| Q |
27 |
aaggatcaaaccccatttctttgactgaattaacagcctcaacaaatctagaatgcttggtgaatgctacacaaggaaaattggataccaaactggaaat |
126 |
Q |
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| T |
17377037 |
aaggatcaaaccccatttctttgactgaattaacagccttaacaaatctagaatgcctggcgaatgctacattgggaaaattggataccagtagagaaat |
17377136 |
T |
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| Q |
127 |
agaactttgaggtacaccaagcttcctcaaaacctcaatgttcggaacagaatcattaaccatggaatcattataaaagttccatgatccacgcctcaaa |
226 |
Q |
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| T |
17377137 |
ggaaccttgaagcacaccaagcttcctcaaaacctcaatattctgaactgcatcatttacaatccaagcattgtgtgtgccccatgttccacgcttcaaa |
17377236 |
T |
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| Q |
227 |
gctaaaactacctttttatcatcgcaaactaggcttttaagaatcttgtaacgaggtattattgttttctctaagcttgctgtcaaaaact---tgtcac |
323 |
Q |
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| T |
17377237 |
gttgaaactacctctttatcattgcgaacgaaacttctaatgacctcatagcgagggataatggatttctccaagcttgaagtcaaaaagtaagtgttcc |
17377336 |
T |
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| Q |
324 |
caatcaagattttggggaaatcaatggttgtagccccaatggattgcaaaaacttgagctttggcaaaagtgtcttatcagattttg-ataaaagtacaa |
422 |
Q |
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| T |
17377337 |
taattagtattttggggagatcagtgtttgaaaccccaatggaacgcaaaaaatcgagtttaggcaaaagggtcttttc-gattttgcataaaagtacaa |
17377435 |
T |
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| Q |
423 |
aagggtgtttcttaacaaggcttgataactgagaatcagagaaaccatag |
472 |
Q |
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| T |
17377436 |
aagggtgtttctttacatagatacataattgggaatcagaaaaaccatag |
17377485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 117
Target Start/End: Original strand, 11404920 - 11404990
Alignment:
| Q |
45 |
ctttgactgaattaacagcctcaacaaatctagaatgcttggtgaatgctacacaaggaaaattggataccaa |
117 |
Q |
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| T |
11404920 |
ctttcactgaattaacaacctcaacaaatg--gaatgcttggtgaatgctacacttggaaaattggttaccaa |
11404990 |
T |
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