View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_low_15 (Length: 465)
Name: NF3678_low_15
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 133 - 451
Target Start/End: Complemental strand, 48447050 - 48446732
Alignment:
| Q |
133 |
gctgcaattgtaatatcatttatgaaaactgacttttgagaagttaccaataaaaacttcacatttatagtttagttattcnnnnnnnnnnnnnnnnnaa |
232 |
Q |
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| T |
48447050 |
gctgcaattgtaatatcatttatgaaaactgacttttgagaagttaccaataaaaacttcacatttatagtttagttattcttttaattttaatttttaa |
48446951 |
T |
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| Q |
233 |
ataatagtgtaagaaatcaaacttaaagatgaaaggaggaggaaaagtgtgtggagcatgagcgatgtaagatatagcaaatctgatcataagcaggggt |
332 |
Q |
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| T |
48446950 |
ataatagtgtaagaaatcaaacttaaagatgaaaggaggaggaaaggtgtgtggagcatgagagatgtaagatatagcaaatctgatcataagcagggct |
48446851 |
T |
|
| Q |
333 |
agaaaaataaagaatatggaaatgaatgaatgcatgtatatatacacatgtacatacataccctgatgagactgagaaggaggcaagaaatgaatgaatg |
432 |
Q |
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| T |
48446850 |
agaaaaataaagaatatggaaatgaatgaatgcatgtatatatacacatgtacatacataccctgatgagactgagaaggaggcaagaaatgaatgaatg |
48446751 |
T |
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| Q |
433 |
taacagaacagaagtaagt |
451 |
Q |
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| T |
48446750 |
taaaagaacagaagtaagt |
48446732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 48447171 - 48447082
Alignment:
| Q |
12 |
aatacttaaagtgtaaaaaatattattttcaatataaaatttaccttttttgttcattaactatctctccctagcatgaccctaaaaata |
101 |
Q |
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| T |
48447171 |
aatacttaaagtgtaaaaaatgttattttcaatacaaaatttaccttttttgttcattaactatctctccctagcatgaccctaaaaata |
48447082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 38821614 - 38821577
Alignment:
| Q |
18 |
taaagtgtaaaaaatattattttcaatataaaatttac |
55 |
Q |
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| T |
38821614 |
taaagtgtaaaaaatattcttttcaatacaaaatttac |
38821577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 5171475 - 5171435
Alignment:
| Q |
22 |
gtgtaaaaaatattattttcaatataaaatttacctttttt |
62 |
Q |
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| T |
5171475 |
gtgtaaaaaatattattttcaatataaaatttacttttttt |
5171435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 41787887 - 41787851
Alignment:
| Q |
19 |
aaagtgtaaaaaatattattttcaatataaaatttac |
55 |
Q |
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|||||||||||||| ||||||||||| |||||||||| |
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| T |
41787887 |
aaagtgtaaaaaatgttattttcaatgtaaaatttac |
41787851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 25175668 - 25175640
Alignment:
| Q |
37 |
ttttcaatataaaatttaccttttttgtt |
65 |
Q |
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| T |
25175668 |
ttttcaatataaaatttaccttttttgtt |
25175640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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