View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_low_16 (Length: 428)
Name: NF3678_low_16
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 7302230 - 7302461
Alignment:
| Q |
17 |
ggaagatccaacaactgactatcatagattcttcgtagaagacacaaacatgtacaaccacgttgtattaggaaccttgttaccacaatacttgtgggtg |
116 |
Q |
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| T |
7302230 |
ggaagatccaacaactgactatcatagattcttcgtagaagacacaaacatgtacaaccacgttgtattaggaaccttgttaccacaatacttgtgggtg |
7302329 |
T |
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| Q |
117 |
ctactcccacggttcttccaaacatggcttcgaaactacgttggtgctgtccttctttacttcatttctggttttttatggtccttctacatttaccatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7302330 |
ctactcccacggttcttccaaacatggcttcgaaactacgttggtgctgtccttctttacttcatttctggttttttatggtccttctacatttaccatt |
7302429 |
T |
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| Q |
217 |
ggaaacagaatgtttatgtccctaaaggtatc |
248 |
Q |
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| T |
7302430 |
ggaaacagaatgtttatgtccctaaaggtatc |
7302461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 36 - 245
Target Start/End: Original strand, 7304262 - 7304471
Alignment:
| Q |
36 |
tatcatagattcttcgtagaagacacaaacatgtacaaccacgttgtattaggaaccttgttaccacaatacttgtgggtgctactcccacggttcttcc |
135 |
Q |
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| T |
7304262 |
tatcgtagattcttcatagaagacacaaacatgtacaaccacattgtattaggaaccttgttaccacactacttgtgggttccacttccaagattcttcc |
7304361 |
T |
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| Q |
136 |
aaacatggcttcgaaactacgttggtgctgtccttctttacttcatttctggttttttatggtccttctacatttaccattggaaacagaatgtttatgt |
235 |
Q |
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| T |
7304362 |
aaagatggcttcgaaactacgttggtgctgtcctactttacttcatttctggtttcttatggtccttctacatttactattggaaacgcaatgtttatct |
7304461 |
T |
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| Q |
236 |
ccctaaaggt |
245 |
Q |
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| T |
7304462 |
tcctaaaggt |
7304471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 7320245 - 7320473
Alignment:
| Q |
17 |
ggaagatccaacaactgactatcatagattcttcgtagaagacacaaacatgtacaaccacgttgtattaggaaccttgttaccacaatacttgtgggtg |
116 |
Q |
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||||||| ||||||| || |||| |||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||| ||||| | ||||||||| |
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| T |
7320245 |
ggaagatacaacaaccgattatcgtagattcttcatagaagacacagacatgtacaaccacattgtattaggaaccttgttgccacagttcttgtgggtt |
7320344 |
T |
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| Q |
117 |
ctactcccacggttcttccaaacatggcttcgaaactacgttggtgctgtccttctttacttcatttctggttttttatggtccttctacatttaccatt |
216 |
Q |
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| T |
7320345 |
ccacttccaagattcttccaaacatggcttcgaaactacattagtggtgttctactttacttcatttcttgtttcttatggtccttctacatttactatt |
7320444 |
T |
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| Q |
217 |
ggaaacagaatgtttatgtccctaaaggt |
245 |
Q |
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| T |
7320445 |
ggaaacaaaatgtttatgtccctaaaggt |
7320473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 90 - 245
Target Start/End: Original strand, 7281860 - 7282015
Alignment:
| Q |
90 |
accttgttaccacaatacttgtgggtgctactcccacggttcttccaaacatggcttcgaaactacgttggtgctgtccttctttacttcatttctggtt |
189 |
Q |
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| T |
7281860 |
accttgttacctcagtttttgtgggtcccacttccaaggttcttccaaacatggcttcgtaactacattggtggtcttctactttacttcatttctggtt |
7281959 |
T |
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| Q |
190 |
ttttatggtccttctacatttaccattggaaacagaatgtttatgtccctaaaggt |
245 |
Q |
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| T |
7281960 |
tcttttggtccttttacatttactgttggaaacgcaatgtttatcttcctaaaggt |
7282015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 130 - 239
Target Start/End: Original strand, 7304896 - 7305005
Alignment:
| Q |
130 |
tcttccaaacatggcttcgaaactacgttggtgctgtccttctttacttcatttctggttttttatggtccttctacatttaccattggaaacagaatgt |
229 |
Q |
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|||| ||||||||||||| ||||| | |||||| |||| |||||||||| |||| |||||| ||||||||||| | ||||||| ||||| | || ||||| |
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| T |
7304896 |
tcttacaaacatggcttccaaacttcattggtggtgtctttctttactttatttatggtttcttatggtccttgttcatttactattgggagcacaatgt |
7304995 |
T |
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| Q |
230 |
ttatgtccct |
239 |
Q |
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| T |
7304996 |
ttatgtccct |
7305005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 376 - 412
Target Start/End: Original strand, 7302590 - 7302626
Alignment:
| Q |
376 |
aaataaatgagattaacgatagtgagttaacagtcca |
412 |
Q |
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| T |
7302590 |
aaataaatgagattaacgatagtgagttgacagtcca |
7302626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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