View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_low_20 (Length: 394)
Name: NF3678_low_20
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 88 - 379
Target Start/End: Original strand, 37615434 - 37615725
Alignment:
| Q |
88 |
aagttttgagacatgagaactacaagttcaaagttgactagtaagaactgagtccaaaacatacataaagtttacgcctggtttttcccatccatatctc |
187 |
Q |
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| T |
37615434 |
aagttttgatacatgagaactacaagttcaaagttgactagtaagaactgagtccaaaacatacataaagtttacggctggtttttcccatcaatatctc |
37615533 |
T |
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| Q |
188 |
ttgctgctttcggcattcaaaacttcaaagcctgaagtagtttaaaccaaacacttgaggttaggaccatcaaataaaaatatgtatttgaatgttgaag |
287 |
Q |
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| T |
37615534 |
ttgctgctttcggcattcaaaacttcaaagcctgaagtagtttaaaccaaaaacttgaggttaggaccatcaaatcaaaatatgtatttgaatgttgaag |
37615633 |
T |
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| Q |
288 |
agacaatactacatcatagtttagtaaatttgaaaggcaaggatatatcaatttactcgatctgtacttttacagtaacaaaagtagttgtt |
379 |
Q |
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| T |
37615634 |
agacaatactacatcatagtttagtaaatttgaaaggcaaggatatatcaatttactcgatctgtacttttacagtaacaaaagtagttgtt |
37615725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 37615324 - 37615438
Alignment:
| Q |
8 |
aaggtaggtccgccttcaaatccattccaagatacttaatccggaatctaaaatgcaagttaacttatcaagttgagttgaagttttgagacatgagaac |
107 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
37615324 |
aaggtaggtccaccttcaaatccattccaagatacttaatccggaatctaaaatgcaagttaacttatcaagttgagttgaagttttgatacatgaaaac |
37615423 |
T |
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| Q |
108 |
tacaagttcaaagtt |
122 |
Q |
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| T |
37615424 |
tacaagttcaaagtt |
37615438 |
T |
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