View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_low_21 (Length: 394)
Name: NF3678_low_21
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 7659605 - 7659233
Alignment:
| Q |
1 |
atttttgccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggtggaagtggtagtg |
100 |
Q |
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| T |
7659605 |
atttttgccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggtggaagtggtagtg |
7659506 |
T |
|
| Q |
101 |
atgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctaatgcaatgaaccatagagacatggttaattaatttgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
7659505 |
atgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctaatgcaatgaaccatagagacatggttaactattttgt |
7659406 |
T |
|
| Q |
201 |
gttatattgtggctatggttatgaaatatatttgatgatgataatatttttgatgttgttgtctcattaagctaagcctcaatatgcttggtatttataa |
300 |
Q |
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| T |
7659405 |
gtactgttgtggctatgattatgaaatatatttgatgatgataatatttttgatgttgttgtctcattaagctatgcctcaatatgcttggtatttataa |
7659306 |
T |
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| Q |
301 |
cgaatcatttctttgactttacacgtttctatgactttacacggtttgttcatattgggacgtacgattgtta |
373 |
Q |
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| T |
7659305 |
ggaatcgtttctttgagtttacacgtttctacgactttacacggtttgttcatattgggacgtacgattgtta |
7659233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 7624080 - 7624305
Alignment:
| Q |
1 |
atttttgccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggtggaagtggtagtg |
100 |
Q |
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| T |
7624080 |
atttttgccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggtggaagtggtagtg |
7624179 |
T |
|
| Q |
101 |
atgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctaatgcaatgaaccatagagacatggttaattaatttgt |
200 |
Q |
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| T |
7624180 |
atgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctattgcaatgaaccatagagacatggttaatttat---- |
7624275 |
T |
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| Q |
201 |
gttatat-tgtggctatggttatgaaatat |
229 |
Q |
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| T |
7624276 |
gttatgtatgtggctatggttatgaaatat |
7624305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 7 - 186
Target Start/End: Complemental strand, 7675226 - 7675047
Alignment:
| Q |
7 |
gccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggtggaagtggtagtgatgaag |
106 |
Q |
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||||||| ||||| ||| |||||||| ||||| || | |||||| | |||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
7675226 |
gccaaggttgcaagagattggtgtggtgcagggccaaggtgtggtaagttacctattattggccatggttttggtccaggtgggagtggtagtgatgaag |
7675127 |
T |
|
| Q |
107 |
atctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctaatgcaatgaaccatagagacatg |
186 |
Q |
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|||| ||||||| |||| ||||||||||| | ||| ||||| || |||||| |||||||||| ||||||||||||| |
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| T |
7675126 |
ttcttgttgcaaacttcaccaaacggtatattaagattgataatatgcaactagagaatgcaatgagccatagagacatg |
7675047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 325
Target Start/End: Original strand, 7624415 - 7624485
Alignment:
| Q |
256 |
ttgttgtctcattaagctaagcctcaatatgcttggtatttata-acgaatcatttctttgactttacacg |
325 |
Q |
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|||||||| |||| ||||||||||||| |||||||||||||||| | ||| | ||||| |||||||||||| |
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| T |
7624415 |
ttgttgtcacattgagctaagcctcaacatgcttggtatttatagaggaaacgtttctctgactttacacg |
7624485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 371
Target Start/End: Original strand, 7624465 - 7624513
Alignment:
| Q |
323 |
acgtttctatgactttacacggtttgttcatattgggacgtacgattgt |
371 |
Q |
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|||||||| |||||||||||||||||||||| |||| ||||| |||||| |
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| T |
7624465 |
acgtttctctgactttacacggtttgttcatcttggaacgtaggattgt |
7624513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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