View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_low_25 (Length: 359)
Name: NF3678_low_25
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 9 - 349
Target Start/End: Original strand, 84903 - 85243
Alignment:
| Q |
9 |
agcagaacctgtgcatgggaaatatattattgaaataaaaattacaattgatttcattcgattaaagaaaannnnnnnaaaatatacaaaagaaaacagc |
108 |
Q |
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| T |
84903 |
agcagagcctgtgcatgggaaatatattattgaaataaaaattacaattgatttcattcgattaaagaaaagggggggaaaatatacaaaagaaaacagc |
85002 |
T |
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| Q |
109 |
acaagaatccagcactaactgtgatgtaatcgtgtaaataaaataacctagaattgacaacaaacagatgtgtctgctaggtaagccaaattgggttgct |
208 |
Q |
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| T |
85003 |
acaagaatccagcactaactgtgatgtaatcgtgtaaataaaataacctagaattgacaacaaacagatgtgtctgctaggtaagccaaattgggttgct |
85102 |
T |
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| Q |
209 |
tgcttttgtaagatatgttaaattttgtgattgcatttggcaattaaattataattctaatagaatttggcaaagatggctataaagaaataacatgatt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
85103 |
tgcttttgtaagatatgttaaattttgtgattgcatttggcaattaaattataattctaatagaatttggcaaagatggctataaagaaataacatgatt |
85202 |
T |
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| Q |
309 |
ttatgcacggattctagcaaacatttcactcacaggttctg |
349 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |
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| T |
85203 |
ttatgcacggattctagcaaacatttcactcacaagttctg |
85243 |
T |
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