View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3678_low_29 (Length: 328)
Name: NF3678_low_29
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_low_29 |
 | |
|
| [»] scaffold0182 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 19)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 21772268 - 21771968
Alignment:
| Q |
18 |
acaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttcagttcatc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
21772268 |
acaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagttaaaacatcatcgtcaaaatgacccttcagttcatc |
21772169 |
T |
|
| Q |
118 |
aatgttatcagcaatctttttgtgtagatcctctggaatgtatccgttgttttctatgtattttgctgcccacataagtttgtacttctctgctaatata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21772168 |
aatgttatcagcaatctttttgtgtagatcctctggaatgtatccgttattttctatgtattttgctgcccacataagtttgtacttctctgctaatatc |
21772069 |
T |
|
| Q |
218 |
agatttgtgttctgatgatgaataggacctattgacacacacttgggtgagtaatgcttctcaaagttttttctatttctgagagactttagcacccttt |
317 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21772068 |
agatttgtgttatgatgatgaataggacctattgacacacacttgggtgagtaatgcttctcaaagttttttctatttctgagagactttagcacccttt |
21771969 |
T |
|
| Q |
318 |
g |
318 |
Q |
| |
|
| |
|
|
| T |
21771968 |
g |
21771968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 21726203 - 21725903
Alignment:
| Q |
18 |
acaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttcagttcatc |
117 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
21726203 |
acaacatccacgacagcttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcgtcgtcaaaatgacccttcagttcatc |
21726104 |
T |
|
| Q |
118 |
aatgttatcagcaatctttttgtgtagatcctctggaatgtatccgttgttttctatgtattttgctgcccacataagtttgtacttctctgctaatata |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21726103 |
aatgttatcagcaatctttttgtgtagatcctctggaatgtgtccggtgttttctatgtattttgctgcccacataagtttgtactactctgctaatatc |
21726004 |
T |
|
| Q |
218 |
agatttgtgttctgatgatgaataggacctattgacacacacttgggtgagtaatgcttctcaaagttttttctatttctgagagactttagcacccttt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21726003 |
agatttgtgttctgatgatgaataggacctattgacacacacttgggtgagtaatgcttctcaaagttttttctatttctgagagactttagcacccttt |
21725904 |
T |
|
| Q |
318 |
g |
318 |
Q |
| |
|
| |
|
|
| T |
21725903 |
g |
21725903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 21714490 - 21714209
Alignment:
| Q |
18 |
acaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttcagttcatc |
117 |
Q |
| |
|
||||||||||||| | ||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
21714490 |
acaacatccacgatagcttttcttcaaggctaccaaagccttcaagagaccaactggttgaagctaaaacatcgttgtcaaaatgacccttcagttcatc |
21714391 |
T |
|
| Q |
118 |
aatgttatcagcaatctttttgtgtagatcctctggaatgtatccgttgttttctatgtattttgctgcccacataagtttgtacttctctgctaatata |
217 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
21714390 |
aatgttatctgcaatctttttgtgtagatcctctggaatgtgtctggtgttttctatgtattttgctgcccacataagtttgtacttctctcctttcttc |
21714291 |
T |
|
| Q |
218 |
agatttgtgttctgatgatgaataggacctattgacacacacttgggtgagtaatgcttctcaaagttttttctatttctga |
299 |
Q |
| |
|
||||||| || | |||||| |||||||||| ||||||| ||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
21714290 |
agatttggattgtcatgatggataggacctaatgacacaaacttgggtgagtaatgcttctcaaaatttgttctatttctga |
21714209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 21788536 - 21788236
Alignment:
| Q |
18 |
acaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttcagttcatc |
117 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| | ||||||| |||||||| | ||| ||| ||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
21788536 |
acaacatccacgacagcttttcttcgaggcttccaaagccttcaagagacttgccagttaaagttaaaacatcgtcgccaaaatgacccttcagttcatc |
21788437 |
T |
|
| Q |
118 |
aatgttatcagcaatctttttgtgtagatcctctggaatgtatccgttgttttctatgtattttgctgcccacataagtttgtacttctctgctaatata |
217 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||| ||| ||||||| ||||||||||||||||||||||| |||||||||||| |||| | |
|
|
| T |
21788436 |
aatgttatctgcaatctttttgtgcagatcctctggaatgtgtccagtgttttcgatgtattttgctgcccacataagcttgtacttctctcctaacttc |
21788337 |
T |
|
| Q |
218 |
agatttgtgttctgatgatgaataggacctattgacacacacttgggtgagtaatgcttctcaaagttttttctatttctgagagactttagcacccttt |
317 |
Q |
| |
|
| ||||||||| | |||||| |||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| ||| | |||||||| |
|
|
| T |
21788336 |
aaatttgtgttgtcatgatggataggacctaccgacaacaacttgggcgagtaatgcttctcaaagttttttctatttctgagatactctgccacccttt |
21788237 |
T |
|
| Q |
318 |
g |
318 |
Q |
| |
|
| |
|
|
| T |
21788236 |
g |
21788236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 21808006 - 21808289
Alignment:
| Q |
18 |
acaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttcagttcatc |
117 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| ||||||| |||||||| | |||| ||| ||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
21808006 |
acaacatccatgacagcttttcttcaaggctaccaaagccttcaagagactggccggttaaagttaaaacatcgtcgccaaaatgacccttcagttcatc |
21808105 |
T |
|
| Q |
118 |
aatgttatcagcaatctttttgtgtagatcctctggaatgtatccgttgttttctatgtattttgctgcccacataagtttgtacttctctgctaatata |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| | ||| |||||||||||||||| || | ||||||||| |||||||||||| |||| | |
|
|
| T |
21808106 |
gatgttatcagcaatctttttgtgtagatcctctagaataaagccgctgttttctatgtatttcgcagaccacataagcttgtacttctctcctaacttc |
21808205 |
T |
|
| Q |
218 |
agatttgtgttctgatgatgaataggacctattgacacacacttgggtgagtaatgcttctcaaagttttttctatttctgaga |
301 |
Q |
| |
|
|||||| | || |||||| |||||||||||||| || |||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
21808206 |
agatttatatttccatgatggataggacctattgataccaacttgggtgagtaatgcttctcaagatttgttctatttctgaga |
21808289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 82 - 318
Target Start/End: Complemental strand, 21704886 - 21704650
Alignment:
| Q |
82 |
taaaacatcatcgtcaaaatgacccttcagttcatcaatgttatcagcaatctttttgtgtagatcctctggaatgtatccgttgttttctatgtatttt |
181 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |
|
|
| T |
21704886 |
taaaacatcatcgctaaaacgacccttcagttcatcaatgttatctgcaatctttttgtgtagttcctctggaataagtccggtgttttctatgtatttt |
21704787 |
T |
|
| Q |
182 |
gctgcccacataagtttgtacttctctgctaatataagatttgtgttctgatgatgaataggacctattgacacacacttgggtgagtaatgcttctcaa |
281 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| | ||| ||| || | |||||| ||||||||||| ||||| |||||||||||||||||| ||||| |
|
|
| T |
21704786 |
gctgcccacataagcttgtacttctctcctaacttcagagttggattgtcatgatggataggacctatcgacactaacttgggtgagtaatgctgctcaa |
21704687 |
T |
|
| Q |
282 |
agttttttctatttctgagagactttagcaccctttg |
318 |
Q |
| |
|
||||||||||| |||||||| ||| | |||||||||| |
|
|
| T |
21704686 |
agttttttctacttctgagatactcttgcaccctttg |
21704650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 21652376 - 21652076
Alignment:
| Q |
18 |
acaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttcagttcatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||| | ||| ||| ||||||||| ||| |||||||||||| ||||| | |
|
|
| T |
21652376 |
acaacatccacgacaacttttcttcaaggctatcaaagccttcaagagacttgccagttaaagttaaaacatcgtcgctaaaatgaccctttagttcgtt |
21652277 |
T |
|
| Q |
118 |
aatgttatcagcaatctttttgtgtagatcctctggaatgtatccgttgttttctatgtattttgctgcccacataagtttgtacttctctgctaatata |
217 |
Q |
| |
|
||| ||||| ||||||||||||||| |||||||| |||| | ||||||||||||||||||||||||||||||||||| || |||| |||| || | | |
|
|
| T |
21652276 |
aattttatcggcaatctttttgtgtcgatcctctagaataaagccgttgttttctatgtattttgctgcccacataagcttatactcctctcctggtttc |
21652177 |
T |
|
| Q |
218 |
agatttgtgttctgatgatgaataggacctattgacacacacttgggtgagtaatgcttctcaaagttttttctatttctgagagactttagcacccttt |
317 |
Q |
| |
|
| |||||| || | |||||| |||||||||||||| ||| ||||||| | |||||| |||||||| || ||||||||||||||| ||| | ||||||||| |
|
|
| T |
21652176 |
atatttgtattgtcatgatggataggacctattgaaacaaacttgggggtgtaatgtttctcaaaattgtttctatttctgagatactgtggcacccttt |
21652077 |
T |
|
| Q |
318 |
g |
318 |
Q |
| |
|
| |
|
|
| T |
21652076 |
g |
21652076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 21785713 - 21785413
Alignment:
| Q |
18 |
acaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttcagttcatc |
117 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||| || |||||||| | |||| ||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
21785713 |
acaacatccacgacagcttttcttcaaggctaccaaagtcttcaagagactggccggttaaagttaaaacatcatcgctaaaatgacccttcagttcatt |
21785614 |
T |
|
| Q |
118 |
aatgttatcagcaatctttttgtgtagatcctctggaatgtatccgttgttttctatgtattttgctgcccacataagtttgtacttctctgctaatata |
217 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||| || || | || || | ||||||||| ||||||||||| |||||||||||| || | |
|
|
| T |
21785613 |
aatgttatcggcaatctttttgtgtagatcgcgtggattgcggcctatattctcgaggtattttgcggcccacataagcttgtacttctctcctgtcttc |
21785514 |
T |
|
| Q |
218 |
agatttgtgttctgatgatgaataggacctattgacacacacttgggtgagtaatgcttctcaaagttttttctatttctgagagactttagcacccttt |
317 |
Q |
| |
|
||||||| || | |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||| ||| | ||||||||| |
|
|
| T |
21785513 |
agatttggattgtcatgatggataggacctattgacactaacttgggtgagtaatgcttctcaaagtttttcctatttcttagatactcttgcacccttt |
21785414 |
T |
|
| Q |
318 |
g |
318 |
Q |
| |
|
| |
|
|
| T |
21785413 |
g |
21785413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 21664408 - 21664122
Alignment:
| Q |
18 |
acaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaa---catcatcgtcaaaatgacccttcagttc |
114 |
Q |
| |
|
|||| |||||||||| ||||||||||||||| | ||||||| |||||||| | |||| ||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
21664408 |
acaatatccacgacagcttttcttcaaggcttccaaagccttcaagagacttgccggttaaagttaaaattacatcatcgtcaaaatgacccttcagttc |
21664309 |
T |
|
| Q |
115 |
atcaatgttatcagcaatctttttgtgtagatcctctggaatgtatccgttgttttctatgtattttgctgcccacataagtttgtacttctctgctaat |
214 |
Q |
| |
|
||| ||||||||| ||||||||||||||||||| |||| || || | ||||| ||||||||||||||||||||||| ||||||||| || |||| |
|
|
| T |
21664308 |
atcgatgttatcaaaaatctttttgtgtagatcccgtggattgagtcttgtattttcaatgtattttgctgcccacataagcttgtacttccctcctaac |
21664209 |
T |
|
| Q |
215 |
ataagatttgtgttctgatgatgaataggacctattgacacacacttgggtgagtaatgcttctcaaagttttttctatttctgaga |
301 |
Q |
| |
|
| |||| ||| || |||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
21664208 |
ttcagatctgtattgccatgatggataggacctattgacaggaacttgggtgagtaatacttctcaaagttttttctgtttctgaga |
21664122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 21628432 - 21628149
Alignment:
| Q |
18 |
acaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttcagttcatc |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||| | ||||||| |||||| || ||| || ||||||||| ||| |||| |||||||||||||||| |
|
|
| T |
21628432 |
acaacatccacgacagcttttcttcaaggcatccaaagccttgaagagagtttcccgttaaatttaaaacatcgtcgctaaaacgacccttcagttcatc |
21628333 |
T |
|
| Q |
118 |
aatgttatcagcaatctttttgtgtagatcctctggaatgtatccgttgttttctatgtattttgctgcccacataagtttgtacttctctgctaatata |
217 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| |||||||| ||| |||||||||||| ||| | |
|
|
| T |
21628332 |
aatgttatcagcaatctttttgtgtagttcctctggaataagtccaatgttttctatgtattttgatgcccacacaagcttgtacttctctcctatgttc |
21628233 |
T |
|
| Q |
218 |
agatttgtgttctgatgatgaataggacctattgacacacacttgggtgagtaatgcttctcaaagttttttctatttctgaga |
301 |
Q |
| |
|
|||||||| | |||||| |||||||||||||||||| ||||||||||||||| |||| |||| | |||| ||||||||||| |
|
|
| T |
21628232 |
agatttgtactgccatgatggataggacctattgacacaaacttgggtgagtaatacttcccaaaatcttttttatttctgaga |
21628149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 21764369 - 21764110
Alignment:
| Q |
18 |
acaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttcagttcatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||| || ||| ||| ||||||||||||| |||| |||||||||||||||| |
|
|
| T |
21764369 |
acaacatccacgacaacttttcttcaaggctatgaaagccttcaagagactttccagttaaagttaaaacatcatcgctaaaacgacccttcagttcatc |
21764270 |
T |
|
| Q |
118 |
aatgttatcagcaatctttttgtgtagatcctctggaatgtatccgttgttttctatgtattttgctgcccacataagtttgtacttctctgctaatata |
217 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||| | | || ||||||||||||||| |||||||||| |||| |||||||||||| |||| | |
|
|
| T |
21764269 |
gatgttatcagcaatcttttggtgtagttcctctggattaagtgcggtgttttctatgtattctgctgcccacttaagcttgtacttctctcctaacttc |
21764170 |
T |
|
| Q |
218 |
agatttgtgttctgatgatgaataggacctattgacacacacttgggtgagtaatgcttc |
277 |
Q |
| |
|
|||| || | | |||||| |||||||||||||||| ||||||||| ||| |||||| |
|
|
| T |
21764169 |
agatctgatctgtcatgatggataggacctattgacaacaacttgggtgtgtagtgcttc |
21764110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 21623500 - 21623242
Alignment:
| Q |
18 |
acaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttcagttcatc |
117 |
Q |
| |
|
||||||||||||||| |||||||| || ||||| ||||||| |||||||| || |||| ||| ||||||||| || ||||||||||||||||||||| |
|
|
| T |
21623500 |
acaacatccacgacagcttttctttaatgctaccaaagccttcaagagactttccggttaaagttaaaacatcgtcactaaaatgacccttcagttcatc |
21623401 |
T |
|
| Q |
118 |
aatgttatcagcaatctttttgtgtagatcctctggaatgtatccgttgttttctatgtattttgctgcccacataagtttgtacttctctgctaatata |
217 |
Q |
| |
|
||| |||||||||||||| ||||| | ||||| ||| | || | |||||| ||||||||||||||||||||||| |||||||||||| |||| | |
|
|
| T |
21623400 |
aatattatcagcaatcttgttgtgcatatccttctgaacttttctggtgtttttgatgtattttgctgcccacataagcttgtacttctctcctaacttc |
21623301 |
T |
|
| Q |
218 |
agatttgtgttctgatgatgaataggacctattgacacacacttgggtgagtaatgctt |
276 |
Q |
| |
|
|||||||| || |||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21623300 |
agatttgtattgccatgatggataggacctattgacaccaacttgggtgagtaatgctt |
21623242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 21681957 - 21681680
Alignment:
| Q |
18 |
acaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttcagttcatc |
117 |
Q |
| |
|
|||||||||| || |||||||||||||||||| || ||||| |||||||| | |||| ||| ||||||||| ||| |||||| ||||||| |||||| |
|
|
| T |
21681957 |
acaacatccatgataacttttcttcaaggctatgatagccttcaagagactcgccggttaaagttaaaacatcgtcgctaaaatggcccttcaattcatc |
21681858 |
T |
|
| Q |
118 |
aatgttatcagcaatctttttgtgtagatcctctggaatgtatccgttgttttctatgtattttgctgcccacataagtttgtacttctctgctaatata |
217 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| | ||||| ||| |||||| ||||||||||||||||||||||| |||||||||||| |||| | |
|
|
| T |
21681857 |
aatgttatcagcaatttttttgtatagatccttttgaatgcttccagtgtttttgatgtattttgctgcccacataagcttgtacttctctcctaacttt |
21681758 |
T |
|
| Q |
218 |
agatttgtgttctgatgatgaataggacctattgacacacacttgggtgagtaatgcttctcaaagttttttctattt |
295 |
Q |
| |
|
|||| ||| || |||||| |||||||||||||||||| ||||||| |||||||| || ||| ||| |||||||| |
|
|
| T |
21681757 |
agatctgtattgccatgatggataggacctattgacacaaacttggggctgtaatgctccttaaattttgttctattt |
21681680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 21647050 - 21646750
Alignment:
| Q |
18 |
acaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttcagttcatc |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||| ||||||| | ||| ||| |||||| || ||| ||||||||||||||||||||| |
|
|
| T |
21647050 |
acaatatccacgacaacttttcttcaaggctacggaagcctttaagagacttgccggtcaaagttaaaacgtcgtcgctaaaatgacccttcagttcatc |
21646951 |
T |
|
| Q |
118 |
aatgttatcagcaatctttttgtgtagatcctctggaatgtatccgttgttttctatgtattttgctgcccacataagtttgtacttctctgctaatata |
217 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||| ||| |||||| ||||||||||||||||||||||| ||||| |||||| ||| | |
|
|
| T |
21646950 |
aatgttatctacaatctttttgtgtagatccttcttaattcttcccgtgtttttgatgtattttgctgcccacataagcttgtatttctctcctatcttc |
21646851 |
T |
|
| Q |
218 |
agatttgtgttctgatgatgaataggacctattgacacacacttgggtgagtaatgcttctcaaagttttttctatttctgagagactttagcacccttt |
317 |
Q |
| |
|
|| |||| || | |||||| ||||||||||||||||| ||||||| | |||||||| |||||| ||| |||||||||||||| ||| | ||||||||| |
|
|
| T |
21646850 |
agctttggattgtcatgatggataggacctattgacaccaacttgggggtgtaatgctcctcaaattttgttctatttctgagatactgtggcacccttt |
21646751 |
T |
|
| Q |
318 |
g |
318 |
Q |
| |
|
| |
|
|
| T |
21646750 |
g |
21646750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 15713930 - 15713647
Alignment:
| Q |
18 |
acaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttcagttcatc |
117 |
Q |
| |
|
|||||||||| |||| ||||||||| ||||||| ||| ||| ||| ||| || |||| ||| ||||||||| || |||||||| |||||||||||| |
|
|
| T |
15713930 |
acaacatccatgacagcttttcttctaggctaccaaatccttgaagtgactttccggttaaagttaaaacatcgtcactaaaatgacacttcagttcatc |
15713831 |
T |
|
| Q |
118 |
aatgttatcagcaatctttttgtgtagatcctctggaatgtatccgttgttttctatgtattttgctgcccacataagtttgtacttctctgctaatata |
217 |
Q |
| |
|
|||||||||||||||||||||||| || |||||| ||||| ||| |||||| ||||||||||| ||||||||||| ||||||||||| || | | |
|
|
| T |
15713830 |
aatgttatcagcaatctttttgtgcagttcctctagaatgcttccagtgtttttgatgtattttgccgcccacataagcttgtacttctcccctgacttt |
15713731 |
T |
|
| Q |
218 |
agatttgtgttctgatgatgaataggacctattgacacacacttgggtgagtaatgcttctcaaagttttttctatttctgaga |
301 |
Q |
| |
|
|||||||| || | |||||| ||||| |||||||| || |||| |||| ||||||| ||||| | ||||| || ||||||||| |
|
|
| T |
15713730 |
agatttgtattgtcatgatggatagggcctattgaaaccaacttaggtgcgtaatgcatctcataatttttactttttctgaga |
15713647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 21689720 - 21689420
Alignment:
| Q |
18 |
acaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttcagttcatc |
117 |
Q |
| |
|
||||||||||||| | |||||||||||| ||| ||||||| | ||||| || ||| | | ||||||||| || ||||||||||||||||||| ||| |
|
|
| T |
21689720 |
acaacatccacgatagcttttcttcaagactatcaaagccttcgagagaatttccggtcaatgttaaaacatcgtcatcaaaatgacccttcagtttatc |
21689621 |
T |
|
| Q |
118 |
aatgttatcagcaatctttttgtgtagat-cctctggaatgtatccgttgttttctatgtattttgctgcccacataagtttgtacttctctgctaatat |
216 |
Q |
| |
|
|||||||||| |||| ||||||||||||| ||||| ||||| ||| |||||| ||||||||||||||||||||||| |||||||||||| |||| | |
|
|
| T |
21689620 |
aatgttatcaacaatgtttttgtgtagatccctct-gaatgcttccagtgtttttgatgtattttgctgcccacataagcttgtacttctctcctaactt |
21689522 |
T |
|
| Q |
217 |
aagatttgtgttctgatgatgaataggacctattgacacacacttgggtgagtaatgcttctcaaagttttttctatttctgagagactttagcaccctt |
316 |
Q |
| |
|
||| | | || |||||| ||||||||| |||||| || | || | |||||||||||||| |||| ||||||||||||| ||| | |||||||| |
|
|
| T |
21689521 |
tagagatttattgccatgatggataggaccttttgacatcaacctcggggtctaatgcttctcaaatttttctctatttctgagatactcttgcaccctt |
21689422 |
T |
|
| Q |
317 |
tg |
318 |
Q |
| |
|
|| |
|
|
| T |
21689421 |
tg |
21689420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 301
Target Start/End: Complemental strand, 21745837 - 21745556
Alignment:
| Q |
20 |
aacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttcagttcatcaa |
119 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||| |||||| || ||| ||| ||||||||| ||| |||| |||||||||||||||||| |
|
|
| T |
21745837 |
aacatccacgacagcttttcttcaaggcattcaaagccttgaagagaatttccagttaaagttaaaacatcgtcgctaaaacgacccttcagttcatcaa |
21745738 |
T |
|
| Q |
120 |
tgttatcagcaatctttttgtgtagatcctctggaatgtatccgttgttttctatgtattttgctgcccacataagtttgtacttctctgctaatataag |
219 |
Q |
| |
|
|||||||| ||||||||||||| ||||| | |||| ||| || | || || | ||||||||||||||||||||| || |||| ||| || | || |
|
|
| T |
21745737 |
tgttatcaacaatctttttgtgcagatcgtgtggattgtggcctgtattctcgaggtattttgctgcccacataagcttatactcttctcctgtctttag |
21745638 |
T |
|
| Q |
220 |
atttgtgttctgatgatgaataggacctattgacacacacttgggtgagtaatgcttctcaaagttttttctatttctgaga |
301 |
Q |
| |
|
||||| || | |||||| |||||||||| |||||| ||||||||||||||||||||||||| ||| |||||||| ||||| |
|
|
| T |
21745637 |
atttggattgtcatgatggataggacctaatgacaccaacttgggtgagtaatgcttctcaaaatttgttctatttatgaga |
21745556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 21992489 - 21992180
Alignment:
| Q |
18 |
acaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttcagttcatc |
117 |
Q |
| |
|
|||||||||| |||| ||||||||| ||||| | ||||||| |||||||| || | | ||| ||||||||| || ||||||||||||||||||||| |
|
|
| T |
21992489 |
acaacatccatgacagcttttcttcgaggcttccaaagccttcaagagactttccagctaaagttaaaacatcgtcactaaaatgacccttcagttcatc |
21992390 |
T |
|
| Q |
118 |
aatgttatcagcaatctttttgtgtagatcctctggaatgtatccgttgttttctatgtattttgctgcccacataagtttgtacttctctgctaatata |
217 |
Q |
| |
|
||||||||| |||||||||||||||||| |||| | ||| ||||| |||||||||||||||||| |||| |||||||||||| |||| | |
|
|
| T |
21992389 |
aatgttatcgataatctttttgtgtagatcgcatggattaagtcctgcattttcgatgtattttgctgcccacgtaagcttgtacttctctcctaacttc |
21992290 |
T |
|
| Q |
218 |
agatttg-------tgttctg--atgatgaataggacctattgacacacacttgggtgagtaatgcttctcaaagttttttctatttctgagagacttta |
308 |
Q |
| |
|
||||||| ||| || |||||| ||||||||||||||||| | ||||||||||| ||||||||||||| |||||||||| ||||| ||| | |
|
|
| T |
21992289 |
agatttgcattgcttgtattgccatgatggataggacctattgacaccaatttgggtgagtagtgcttctcaaagtcttttctatttttgagatactctg |
21992190 |
T |
|
| Q |
309 |
gcaccctttg |
318 |
Q |
| |
|
||||||||| |
|
|
| T |
21992189 |
ccaccctttg |
21992180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 21792318 - 21792018
Alignment:
| Q |
18 |
acaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttcagttcatc |
117 |
Q |
| |
|
|||| ||||| |||| ||||||||| ||||||| |||||| |||||||| | |||| ||| ||||||||||||| |||| || ||||||| ||| |
|
|
| T |
21792318 |
acaatatccatgacagcttttcttcgaggctaccaaagccgtcaagagacttgcgggttaaagttaaaacatcatcgctaaaacgatccttcagcgtatc |
21792219 |
T |
|
| Q |
118 |
aatgttatcagcaatctttttgtgtagatcctctggaatg-tatccgttgttttctatgtattttgctgcccacataagtttgtacttctctgctaatat |
216 |
Q |
| |
|
||||||||| |||||||||||||| ||||| | ||||| | || ||| |||| ||||||| ||||||||||||||| |||||||||||| |||| |
|
|
| T |
21792218 |
aatgttatcggcaatctttttgtgcagatctttcagaatgctttcagtt-tttttgatgtattctgctgcccacataagcttgtacttctctcctaactc |
21792120 |
T |
|
| Q |
217 |
aagatttgtgttctgatgatgaataggacctattgacacacacttgggtgagtaatgcttctcaaagttttttctatttctgagagactttagcaccctt |
316 |
Q |
| |
|
|||| ||| | |||||| || ||||||||||| ||| || | || ||||||||||||||| |||| ||| ||||||||| ||| | ||||||| |
|
|
| T |
21792119 |
cagatctgtactgccatgatggatgggacctattgatacaaaccttgggatgtaatgcttctcaaaattttctctctttctgagatactctgccaccctt |
21792020 |
T |
|
| Q |
317 |
tg |
318 |
Q |
| |
|
|| |
|
|
| T |
21792019 |
tg |
21792018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 265
Target Start/End: Complemental strand, 25470 - 25370
Alignment:
| Q |
165 |
tgttttctatgtattttgctgcccacataagtttgtacttctctgctaatataagatttgtgttctgatgatgaataggacctattgacacacacttggg |
264 |
Q |
| |
|
||||||||||||||| |||||||||| |||| |||||||||||| |||| | |||||| | || | |||||| ||||||||||||||||| ||||||| |
|
|
| T |
25470 |
tgttttctatgtattctgctgcccacttaagcttgtacttctctcctaacttcagatttttattgtcatgatggataggacctattgacaccaacttggg |
25371 |
T |
|
| Q |
265 |
t |
265 |
Q |
| |
|
| |
|
|
| T |
25370 |
t |
25370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 25680 - 25588
Alignment:
| Q |
18 |
acaacatccacgacaacttttcttcaaggctacgaaagcctgcaagagaccatctggttgaagctaaaacatcatcgtcaaaatgacccttca |
110 |
Q |
| |
|
|||||||| |||||| ||||||||||||| ||| ||||||| |||||||| | | ||| ||| ||||||||| ||| |||||||||||||| |
|
|
| T |
25680 |
acaacatcaacgacagcttttcttcaagggtaccaaagccttcaagagactttttagttaaagttaaaacatcctcgctaaaatgacccttca |
25588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 18192138 - 18192210
Alignment:
| Q |
82 |
taaaacatcatcgtcaaaatgacccttcagttcatcaatgttatcagcaatctttttgtgtagatcctctgga |
154 |
Q |
| |
|
||||||||| ||| ||||| ||||||||||||||| ||||||||| ||||| | || || |||||||| |||| |
|
|
| T |
18192138 |
taaaacatcgtcggcaaaaagacccttcagttcattaatgttatctgcaatatcttggtatagatcctttgga |
18192210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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