View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3678_low_31 (Length: 325)
Name: NF3678_low_31
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_low_31 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 16 - 314
Target Start/End: Original strand, 9385062 - 9385367
Alignment:
| Q |
16 |
caattacaataacaaaacattaaattaagaactagtcttataaattaatttaaaatatcaataattgtagacatatctttgaagcaatgtggagga--gg |
113 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
9385062 |
caattacaataacaaaacattagattaagaactagtcttataaattaatttaaaatatcaataattgtagacatatctttgaagcaatgtggaggcttgg |
9385161 |
T |
|
| Q |
114 |
gtcctaaacgtctttatcacgggatgtggaattggatgcttcttcatgttcacttgtggactagagtacatcacatagatttctttctaaatttacacta |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9385162 |
gtcctaaacgtctttatcacgggatgtggaattggatgcttcttcatgttcacttgtggactagagtacatcacatagatttatttctaaatttacacta |
9385261 |
T |
|
| Q |
214 |
tttttatat-------acctataaaagataaggttcacatcatttatttccttagcgcgcatagttttgcgttttgatccgtgtctgccaaatctattca |
306 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9385262 |
tttttatataagatacacctat--aagataaggttcacatcatttatttccttagcgcgcatagttttgcgttttgatccgtgtctgccaaatctattca |
9385359 |
T |
|
| Q |
307 |
tcattcat |
314 |
Q |
| |
|
|||||||| |
|
|
| T |
9385360 |
tcattcat |
9385367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University