View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_low_32 (Length: 325)
Name: NF3678_low_32
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 309
Target Start/End: Original strand, 11298344 - 11298636
Alignment:
| Q |
17 |
tcattgagtagcacaagagcagcaaaagaggtctccatgtttgaccattaggaagcactttgtgtccatttttattctttctacaagaagggtgattctc |
116 |
Q |
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| T |
11298344 |
tcattgagtagcacaagagcagcaaaagaggtctccaagtttgaccattaggaagcactttgtgtccatttttattctttctacaagaagggtgattctc |
11298443 |
T |
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| Q |
117 |
aacaagtgcaaccggattcatcaaactcggattcataatccgttcatcgccaataacctgtccaatggcttgttgaactgcgcaatttctctgagtcaca |
216 |
Q |
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|||||||||||||||||||||||||||| |||| ||||| |||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
11298444 |
aacaagtgcaaccggattcatcaaactcagattattaatctgttcgtcgccaataacctgtccaatggcttgttgaaccgcgcgatttctctgagtcaca |
11298543 |
T |
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| Q |
217 |
aacacatcataactcaatggtgaacctaatggaccatccggaggtgcagtagcagcatgagtcaatgtgataacagtattcctccatatcaat |
309 |
Q |
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| T |
11298544 |
aacacatcataactcaatggtgaacctaatggaccatccggaggtgcagtggcagcatgagtcaatgtgataacagtattcctccatatcaat |
11298636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 280
Target Start/End: Complemental strand, 36608458 - 36608195
Alignment:
| Q |
17 |
tcattgagtagcacaagagcagcaaaagaggtctccatgtttgaccattaggaagcactttgtgtccatttttattctttctacaagaagggtgattctc |
116 |
Q |
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|||||||||| || || |||| || ||||||||||| ||||||| ||||||||||| || || |||| | | || || | ||| ||||| || || || |
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| T |
36608458 |
tcattgagtaacataaaagcaataacagaggtctccaactttgaccgttaggaagcaccttctggccatctctgtttttccgacatgaaggatggttttc |
36608359 |
T |
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| Q |
117 |
aacaagtgcaaccggattcatcaaactcggattcataatccgttcatcgccaataacctgtccaatggcttgttgaactgcgcaatttctctgagtcaca |
216 |
Q |
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|||||| | ||| |||||||||||||| |||||||||| ||| || |||| | | || ||||||| ||||||||| | |||| |||| ||| |
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| T |
36608358 |
aacaagagaaactggattcatcaaacttggattcataagacgtaggtcaccaacagcttgaccaatggtttgttgaacaatatgagttctttgagcaaca |
36608259 |
T |
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| Q |
217 |
aacacatcataactcaatggtgaacctaatggaccatccggaggtgcagtagcagcatgagtca |
280 |
Q |
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|| ||||||||||| | ||| |||||| |||| || |||||||| |||| ||||||||||||| |
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| T |
36608258 |
aatacatcataacttagtggggaacctgatggcccgtccggaggagcagaggcagcatgagtca |
36608195 |
T |
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