View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3678_low_34 (Length: 307)

Name: NF3678_low_34
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3678_low_34
NF3678_low_34
[»] scaffold0332 (1 HSPs)
scaffold0332 (4-296)||(5165-5457)


Alignment Details
Target: scaffold0332 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 4 - 296
Target Start/End: Original strand, 5165 - 5457
Alignment:
Q  4 agcaaagggaggatgtcagggaacggaatattgagtgtacttatactgcttgcgttgcagtcgctggtcggaggtgattacatcccaccgaagaaatacg 103  Q
    ||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5165 agcaaagagaagatgtcagggaaaggaatattgagtgtacttatactgcttgcgttgcagtcgctggtcggaggtgattacatcccaccgaagaaatacg 5264  T
Q  104 acggattcgtttacaagaatcgtcatcacttgagttacgatactattcagatcgaagctttctatgatcctttatgccctgacagcgctgattcatggcc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5265 acggattcgtttacaagaatcgtcatcacttgagttacgatactattcagatcgaagctttctatgatcctttatgccctgacagcgctgattcatggcc 5364  T
Q  204 acctctcaaaaaagctcttcatcactactcctctcgtgtttccttcgttgttcatcttcttcctctaccgttcgttctctaatcccttccttt 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5365 acctctcaaaaaagctcttcatcactactcctctcgtgtttccttcgttgttcatcttcttcctctaccgttcgttctctaatcccttccttt 5457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University