View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_low_35 (Length: 297)
Name: NF3678_low_35
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 45458297 - 45458019
Alignment:
| Q |
1 |
ttgagcactatgatggcatacttgatcaaagaaatagttgttagagtccaaaaaatgaaggagaagagttcataaacaacttcctcggattcaagatctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45458297 |
ttgagcactatgatggcatacttgatcaaagaaatagttgttagagtccaaaaaatgaaggagaagagttcataaacaacttcctcggattcaagatctt |
45458198 |
T |
|
| Q |
101 |
gcgctcgcattgtcccgaacacatataagggagcagtgctaagttgaccataaactattccaataatttgaaatgacaagagaattgtttgattccatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45458197 |
gcgctcgcattgtcccgaacacatataagggagcagtgctaagttgaccataaactattccaataatttgaattgacaagagaattgtttgattccatct |
45458098 |
T |
|
| Q |
201 |
tttattctgaaaaaataatatggagacagaaattatgaaaaggagctagggaactagaaagatcatttgtttgtatatt |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45458097 |
tttattctgaaaaaataatatggagacagaaattatgaaaaggagctagggaactagaaagatcatttgtttgtatatt |
45458019 |
T |
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