View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_low_37 (Length: 294)
Name: NF3678_low_37
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 52167860 - 52168153
Alignment:
| Q |
1 |
tcataccacatgatttacatatttaatgcggttcaggccacaaatccataatgatttaacagaatcataatatatttaatacgctctttattcttgtttt |
100 |
Q |
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| T |
52167860 |
tcataccacataatttacatatttaacgcggttcaggccacaaatccataatgatttaacagaatcataatatatttaatacgctctttattcttgtttt |
52167959 |
T |
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| Q |
101 |
------------------tatgattaggaccaaaaaggaatgtaatagaccatatattattaaattatatgatcctcaaataata---tctcagactaga |
179 |
Q |
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| T |
52167960 |
aatagtcacaattgtttttatgattaggaccaaaaaggaatgtaatagaccatatatta---aattatatgatcatctaataataatatctcagactaga |
52168056 |
T |
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| Q |
180 |
aatgaatgatttt-gcttttataatctgagtaattgcgatggatttcacctatcactcattggtgcacgcctgtattccacatgatttgacaatttt |
275 |
Q |
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| T |
52168057 |
aatgaatgatttttgcttttataatctgagtaattgcgatggatttcccctatcactcattggtggacgcctgtattccacatgatttgacaatttt |
52168153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 102 - 272
Target Start/End: Original strand, 19328220 - 19328386
Alignment:
| Q |
102 |
atgattaggaccaaaaaggaatgtaatagaccatatattattaaattatatgatcctcaaataatatctcagactagaaatgaatgattttgcttttata |
201 |
Q |
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| T |
19328220 |
atgattaaggccaaaaaggagtgtaatataccatatatt---aaattatataatcctctaataatatctcagaccagaaagaaatgattttgcttttatc |
19328316 |
T |
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| Q |
202 |
atctgagtaattgcgatggatttcacctatcactcattggtgcacgcctgtattccacatgatttgacaat |
272 |
Q |
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| T |
19328317 |
attcgagtaattgcgatggattccccctatcactcattggtacacg-ctctattgcacatgatttgacaat |
19328386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 19327622 - 19327719
Alignment:
| Q |
1 |
tcataccacatgatttacatatttaatgcggttcaggccacaaatccataatgatttaacagaatcataatatatttaatacgctctttattcttgtttt |
100 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||| | |||||| ||||||| |
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| T |
19327622 |
tcatagcacatgatttacatatttaatgtcgttcaggccacaaatccataatgatttaacataatcata--atatttaatacggtatttattgttgtttt |
19327719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 124 - 217
Target Start/End: Original strand, 19328047 - 19328137
Alignment:
| Q |
124 |
gtaatagaccatatattattaaattatatgatcctcaaataatatctcagactagaaatgaatgattttgcttttataatctgagtaattgcga |
217 |
Q |
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| T |
19328047 |
gtaatagaccatatatta---aattaaatgatcctctaataatatctcagaccagaaaggaatgattttgcttttatcatctaagtaattgcga |
19328137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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