View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_low_4 (Length: 616)
Name: NF3678_low_4
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 540; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 19 - 602
Target Start/End: Complemental strand, 28963112 - 28962530
Alignment:
| Q |
19 |
cgtgcatggtttgcttctcgtaccataaagcatttttctttcttaaatcaaggtaaatttcacaaaatcactataaaaccgtaattttgttataactaaa |
118 |
Q |
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| T |
28963112 |
cgtgcatggtttgct-ctcgtaccataaagcatttttctttcttaaatcaaggtaaatttgacaaaatcactataaaaccgtaattttgttataactaaa |
28963014 |
T |
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| Q |
119 |
aaattcatccatattcttacattctagctgttggccgtgaacaccttttatgcatgtgtttggttcgaacacattctagcttttgacaaaattacagaca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28963013 |
aaattcatccatattcttacattctagctgttggccgtgaacaccttttatgcatgtgtttcgttcgaacacattctagcttttgacaaaattacagaca |
28962914 |
T |
|
| Q |
219 |
tatatcgtaattatgtcaaattcaccgtcaatccaatagtgtatattatatacaaaattatgaatatgttcaaacgatgttcctccaagtgattaataaa |
318 |
Q |
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| T |
28962913 |
tatatcgtaattatgtcaaattcaccgtcaatccaatagtgtatattatatacaaaattatgaatatgttcaaacgatgttcctccaagtgattaataaa |
28962814 |
T |
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| Q |
319 |
tatccttgcagagaatcaattttcttttactgctaaattttgaactgtgaccatcatcatcaaacccttttatttaatttcataaaacgatgataagatt |
418 |
Q |
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| T |
28962813 |
tatcctagcagagaatcaattttcttttactgctaaattttgaattgtgaccatcatcatcaaacccttttatttaatttcataaaacgatgataagatt |
28962714 |
T |
|
| Q |
419 |
ccatcctctgcaacttcatttgattattaaacttcttgataaaagcttcagctcttttattcaattcttcaggactcattgatttttctctcttcaatga |
518 |
Q |
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| T |
28962713 |
ccatcctctgcaacttcatttgattattaaacttcttgataaaagcttcagctcttttattcaattcttcaggactcattgatttttctctcttcaatga |
28962614 |
T |
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| Q |
519 |
agctctatcattgaaagtttcagactttttcaactctctttcagcccaagcaacatgatcgtcatcaccaccacaaaaaccgcc |
602 |
Q |
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| T |
28962613 |
agctctatcattgaatgtttcagactttttcaactccctttgagcccaagcaacaggatcatcatcaccaccacaaaaaccgcc |
28962530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 394 - 599
Target Start/End: Complemental strand, 29002467 - 29002262
Alignment:
| Q |
394 |
aatttcataaaacgatgataagattccatcctctgcaacttcatttgattattaaacttcttgataaaagcttcagctcttttattcaattcttcaggac |
493 |
Q |
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||||||| |||||| ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29002467 |
aatttcagaaaacgctgataagattcaagcctctgcaacttcatctgattattaaacttcttgataaaagcttcagctcttttattcaattcctcaggac |
29002368 |
T |
|
| Q |
494 |
tcattgatttttctctcttcaatgaagctctatcattgaaagtttcagactttttcaactctctttcagcccaagcaacatgatcgtcatcaccaccaca |
593 |
Q |
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| T |
29002367 |
tcattgatttttctcttttcaatgaagctctatcattgaaagtttcagactttttcaactccctttcagcccaagcaacaggatcatcatcaccactacc |
29002268 |
T |
|
| Q |
594 |
aaaacc |
599 |
Q |
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|||||| |
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| T |
29002267 |
aaaacc |
29002262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 29002619 - 29002550
Alignment:
| Q |
268 |
atacaaaattatgaatatgttcaaacgatgttcctccaagtgattaataaatatccttgcagagaatcaatttt |
341 |
Q |
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||||||| ||||||||||||||||| |||| |||||||||| || || |||||||||| ||||||||||| |
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| T |
29002619 |
atacaaacttatgaatatgttcaaatcatgtacctccaagtggtt----aaaatccttgcagtgaatcaatttt |
29002550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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