View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_low_41 (Length: 268)
Name: NF3678_low_41
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_low_41 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 268
Target Start/End: Complemental strand, 45458592 - 45458337
Alignment:
| Q |
13 |
aatatcaaatagtgacaggacttgtgtttctcaatggcccttcgtgctttggaatcagtattaatcttagaagaaggagttgttgtctcctcaaaaagca |
112 |
Q |
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| T |
45458592 |
aatatcaaatagtgacaggacttgtgtttctcaatggcccttcgtgctttggaatcagtattaatcttagaagaaggagttgttgtctcctcaaaaagca |
45458493 |
T |
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| Q |
113 |
cgacctcatcagtggttctatcacaagggagtaggccaacttttgcatttctacacaacagtgagtataaagcaaaaataccacctggaaagtattgtaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | |
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| T |
45458492 |
cgacctcatcagtggttctatcacaagggagtaggccaacttttgcatttctacacaacagtgagtataaagcaaaaataccacctggaaaatattttca |
45458393 |
T |
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| Q |
213 |
atgaagtgaatataaatggagtaaataaatatttactggaactaaagtaaataaaa |
268 |
Q |
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| T |
45458392 |
atgaagtgaatataaatggagtaaataaatatttactgaaactgaagtgaataaaa |
45458337 |
T |
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