View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_low_43 (Length: 264)
Name: NF3678_low_43
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_low_43 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 137 - 264
Target Start/End: Complemental strand, 587480 - 587353
Alignment:
| Q |
137 |
tgtatcattcatgcccaactccatgttcatatttaagtcaatccaattctgcaaatttgcttcaaaaaagttctctctttgattaatcctaattgtattc |
236 |
Q |
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| T |
587480 |
tgtatcattcatgcccaactccatgttcatatttaagtcaatccaattctgcaaatttgcttcaaaaaagttctctctttgattaatcctaattgtattc |
587381 |
T |
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| Q |
237 |
aaccatataccgcaaacggccaatattc |
264 |
Q |
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| T |
587380 |
aaccatataccgcaagcggacaacattc |
587353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 587636 - 587517
Alignment:
| Q |
11 |
cataggatgattatattgattgtccatgtaacaattaaccctccttgttccaagagttaagaggcattgtagcttcactatcatgactcaactgtttctc |
110 |
Q |
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| T |
587636 |
cataggatgattatattgattgtccatgtaacaattaaccctccttgttccaagagttaagaggcattgtagcttcactatgatgactcaactgtttctc |
587537 |
T |
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| Q |
111 |
caagaccacaaggcatgaca |
130 |
Q |
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| T |
587536 |
caagaccacaaggcatgaca |
587517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 32057965 - 32058052
Alignment:
| Q |
156 |
tccatgttcatatttaagtcaatccaattctgcaaatttgcttcaaaaaagttctctctttgattaatcctaattgtattcaaccata |
243 |
Q |
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| T |
32057965 |
tccatgttcatatttaagccaatccaatgctgcaaatctgcttcaaaaaagttctctctttgattaataataactgtattcaaccata |
32058052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 26799298 - 26799390
Alignment:
| Q |
155 |
ctccatgttcatatttaagtcaatccaattctgcaaatttgcttcaaaaaagttctctctttgattaatcctaattgtattcaaccatatacc |
247 |
Q |
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| T |
26799298 |
ctccatgctcaaatttaagtcaatccaatgctgcaaatatgcttcaaaaaagctctttctttgataaataccaactgtattcaaccatatacc |
26799390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 32057803 - 32057924
Alignment:
| Q |
15 |
ggatgattatattgattgtccatgtaacaattaaccctccttgt--------tccaagagttaagaggcattgtagcttcactatcatgactcaact-gt |
105 |
Q |
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| T |
32057803 |
ggatgaatatattgatagtccatctaacaattaaccctcgttgtaatctccttccatgagttaagagacatcgtagctttactatcataactcaacttgt |
32057902 |
T |
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| Q |
106 |
ttctccaagaccacaaggcatg |
127 |
Q |
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| T |
32057903 |
ttctccataaccacaaggcatg |
32057924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 26799236 - 26799280
Alignment:
| Q |
59 |
tccaagagttaagaggcattgtagcttcactatcatgactcaact |
103 |
Q |
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| T |
26799236 |
tccacgagttaagaggcatcatagcttgactatcatgactcaact |
26799280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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