View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_low_44 (Length: 258)
Name: NF3678_low_44
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 42685653 - 42685501
Alignment:
| Q |
18 |
ctaaggactccggtcaagatattgttgaattcactatcttcgtattgnnnnnnnngtttataatctatttccttgataccattgttgggtagtttgaatg |
117 |
Q |
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| T |
42685653 |
ctaaggactccggtcaagatattgttgaattcactatcttcgtattgttttttttgtttataatctatttccttgataccattgttggctagtttgaatg |
42685554 |
T |
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| Q |
118 |
ctggtgaaatgtaacttaggagacgaaagattgatgtcaagaaagaagaaaac |
170 |
Q |
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| T |
42685553 |
ctggtgaaatgtaacttaggagacgaaagattgatgtcaagaaagaagaaaac |
42685501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 42685460 - 42685423
Alignment:
| Q |
211 |
aggataggtaattccaattttgaaagaaagcacctatg |
248 |
Q |
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| T |
42685460 |
aggataggtaattccaattttgaaagaaagcacctatg |
42685423 |
T |
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