View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3678_low_45 (Length: 251)
Name: NF3678_low_45
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_low_45 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 14 - 241
Target Start/End: Complemental strand, 37647956 - 37647729
Alignment:
| Q |
14 |
caaaaacttcatcaaaacctattccaactttttacaaaaatcctctagccacaagtatggactttcacttctctacttggattctgctccactttatgca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37647956 |
caaaaacttcatcaaaacctattccaactttttacaaaaatcttctagccacaagtatggactttcacttctctacttggattctgctccactttatgca |
37647857 |
T |
|
| Q |
114 |
ccttaattaacacttattgttttctttttggttggtaaatcaatggactctcatgtttgatttttctcaattgatcattcagcttttccttcatagcagc |
213 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37647856 |
ccttacttaacacttattgttttctttttagttggtaaatcaatggactctcatgtttgatttttctcaattgatcattcagcttttccttcatagcagc |
37647757 |
T |
|
| Q |
214 |
aatccacctcgtgtttttcatgcctttg |
241 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
37647756 |
aatccacctcgtgtttttcatgcctttg |
37647729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University