View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3678_low_49 (Length: 242)
Name: NF3678_low_49
Description: NF3678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3678_low_49 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 7659825 - 7659597
Alignment:
| Q |
14 |
gagatgaactgaggagatttttcggagcattcgccaccgcggaccataaggtgcaaacacaagatcttgatagttataagctatatatttagctccggtg |
113 |
Q |
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| T |
7659825 |
gagatgaactgaggagatttttcggagcattcgccaccgcggaccataaggtgcaaacacaaggtcttgatagttataagctatatatttagctccggtg |
7659726 |
T |
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| Q |
114 |
ttgggtggccggctactaaagttagcatcatgaacctttaagaattgttcggcaacggagcctgaagccgccacgataacgtccacaaaacctaatttga |
213 |
Q |
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| T |
7659725 |
ttgggtggccggctactaaagttagcatcatgaacctttaagaattgttcggcaacggagccagaagccgccacgataacgtccacaaaacctaatttga |
7659626 |
T |
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| Q |
214 |
ggtgcatcaaagggccatgaatttttgcc |
242 |
Q |
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| T |
7659625 |
ggtgcatcaaagggccatgaatttttgcc |
7659597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 7623860 - 7624088
Alignment:
| Q |
14 |
gagatgaactgaggagatttttcggagcattcgccaccgcggaccataaggtgcaaacacaagatcttgatagttataagctatatatttagctccggtg |
113 |
Q |
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| T |
7623860 |
gagatgaacggaggagatttttcggagcattcgccacctcggaccataaggggcaaacacaagatcttgatagttataagctatatatttagctccggtg |
7623959 |
T |
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| Q |
114 |
ttgggtggccggctactaaagttagcatcatgaacctttaagaattgttcggcaacggagcctgaagccgccacgataacgtccacaaaacctaatttga |
213 |
Q |
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| T |
7623960 |
ttgggtggccggctactaaagttagcatcatgaacctttaagaattgttcggcaacggagcctgaagccgccacgataacgtccacaaaacctaatttga |
7624059 |
T |
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| Q |
214 |
ggtgcatcaaagggccatgaatttttgcc |
242 |
Q |
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| T |
7624060 |
ggtgcattaaagggccatggatttttgcc |
7624088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 29 - 231
Target Start/End: Complemental strand, 7675437 - 7675235
Alignment:
| Q |
29 |
gatttttcggagcattcgccaccgcggaccataaggtgcaaacacaagatcttgatagttataagctatatatttagctccggtgttgggtggccggcta |
128 |
Q |
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| T |
7675437 |
gatttttctgagtagtcgccaccttggaccataaggaccaaacacaaggtcttgataattataacctatgtacttagctccggcattgggtggccggcta |
7675338 |
T |
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| Q |
129 |
ctaaagttagcatcatgaacctttaagaattgttcggcaacggagcctgaagccgccacgataacgtccacaaaacctaatttgaggtgcatcaaagggc |
228 |
Q |
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| T |
7675337 |
ctaaagttagcatcatgtacctttaagaattgttccgccacggaggccgaagccgccacgatcacatccaccgagcctaatttgaggtgcatcaaagggc |
7675238 |
T |
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| Q |
229 |
cat |
231 |
Q |
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||| |
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| T |
7675237 |
cat |
7675235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 184
Target Start/End: Complemental strand, 45477762 - 45477623
Alignment:
| Q |
45 |
cgccaccgcggaccataaggtgcaaacacaagatcttgatagttataagctatatatttagctccggtgttgggtggccggctactaaagttagcatcat |
144 |
Q |
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|||||||| || |||||||| ||||| |||||||||||||| ||||| |||| ||||| || |||| ||| | |||||||||| ||| || | ||||| |
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| T |
45477762 |
cgccaccgtggtccataaggagcaaaaacaagatcttgataattatatgctaagtatttggcgccggagttagttggccggctagaaaaattggtatcat |
45477663 |
T |
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| Q |
145 |
gaacctttaagaattgttcggcaacggagcctgaagccgc |
184 |
Q |
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|||| |||||||||||||| || || ||| | |||||||| |
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| T |
45477662 |
gaacttttaagaattgttcagcgaccgaggcggaagccgc |
45477623 |
T |
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